View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0435_high_2 (Length: 448)
Name: NF0435_high_2
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0435_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 34958290 - 34958645
Alignment:
| Q |
1 |
aaacgattaaatttgattaaacatggatactatatatgtagatattacagtttacagatatatcttttatgagaataattaagaaatatgttaatgctcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34958290 |
aaacgattaaatttgattaaacatggatactatatatgtagatattacagtttacagatatatcttttatgagaataattaagaaatatgttaatgctcg |
34958389 |
T |
|
| Q |
101 |
gtgagactcctcggagcttaaacaaaatcacagtaatttcattaaactcacccaatctcaacatataataatatttatcaagtattattatatgatcttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
34958390 |
gtgagactcctcggagcttaaacaaaatcacagtaatttcattaaactcacccaatctcaacatatactaatatttatcaagtattgttatatgatcttt |
34958489 |
T |
|
| Q |
201 |
ggattgaatagaagaaaatgtggtttcttttaaagactatatatgcgcatattctcactcttactagttcaggatatgtcagtagggtcgaaaaaagtca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34958490 |
ggattgaatagaagaaaatgtggtttcttttaaagactatatatgcgcatattctcactcttactagttcaggatatgtcagtagggtcgaaaaaagtca |
34958589 |
T |
|
| Q |
301 |
taattttgttttttgaaaatgaaaaacatatagaaattgtaattaagtaattaagt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34958590 |
taattttgttttttgaaaatgaaaaacatatagaaattgtaattaagtaattaagt |
34958645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 60 times since January 2019
Visitors: 3256