View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0435_high_8 (Length: 265)
Name: NF0435_high_8
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0435_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 23365963 - 23365714
Alignment:
| Q |
9 |
tatgttaagtgcttctttggtttggcgttttctaccaacagacacacatctcccacccttcaaggtggtttcttcattttgcgggattttggttctcttt |
108 |
Q |
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|||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
23365963 |
tatgttaagtgccggtttggtttggcgttttctgccaacagtcgcacatctcccacccttcaacgtggtttcttcattttgtaggattttggttctcttt |
23365864 |
T |
|
| Q |
109 |
tataaaacccgattcattctttcaaaatcaattccatgagaagtttcaaatcctagctttcatagcgagtgtcaaataaattcttccttaa--tttttgg |
206 |
Q |
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||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||| |
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| T |
23365863 |
tataaaa-ccgattcattcttttagaatcaattccatgagaagtttcaaatcctagctttcatatagagcgtcaaatcaattcttccttaaatattttgg |
23365765 |
T |
|
| Q |
207 |
ttggaagttagatgactcattttctctattcttttccctcaccttcatctc |
257 |
Q |
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|||| |||||||| |||||||||||||||||||||| |||||| |||||| |
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| T |
23365764 |
ttggtagttagataactcattttctctattcttttctttcacctccatctc |
23365714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 34401317 - 34401454
Alignment:
| Q |
13 |
ttaagtgcttctttggtttggcgttttct-accaacagacacacatctcccacccttcaaggtggtttcttcattttgcgggat-tttggttctctttta |
110 |
Q |
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|||||||||| ||||||||||||||| || | |||||||| ||| |||||||||| |||| ||||||| ||||||| | | || |||||||||||||| |
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| T |
34401317 |
ttaagtgcttgtttggtttggcgtttcctaagcaacagacgcacgtctcccacccgtcaacatggtttc-tcattttacagcatgtttggttctcttttc |
34401415 |
T |
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| Q |
111 |
taaaacccgattcattctttcaaaatcaattccatgagaa |
150 |
Q |
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||||| | ||||| |||| ||||||||||||||||||| |
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| T |
34401416 |
taaaa-tcaattcaatcttctaaaatcaattccatgagaa |
34401454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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