View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0435_low_11 (Length: 344)
Name: NF0435_low_11
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0435_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 49494208 - 49493916
Alignment:
| Q |
1 |
gaactaaacctaacatctttattaaatgaaagtgtttcgatgttattgtaatagacactaactcttctattagggtttctgattgtgagtttgacggaaa |
100 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49494208 |
gaaccaaacctaaaatctttataaaatgaaagtgtttcgatgtcattgtaatagacactaactcttctattagggtttctgattgtgagattgacggaaa |
49494109 |
T |
|
| Q |
101 |
gatcatactgaagtgtgttgttatttgtgaaattgaattgagtaagtgatgcctccgtaacggtgaacttgagggcgttaggacgcacgataagccagaa |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49494108 |
gatcataatgaagtgtgttgttatttgtgaaattgaattgagtaagtgatgcctccataacggtgaacttgagggcgttaggacgcacgataagccagaa |
49494009 |
T |
|
| Q |
201 |
gaggaaaccgaagattgccgccaagatgatgattgtggctatgattctgcaaattaggcttaaaatgcagttgaacatgcatccgcaacagct |
293 |
Q |
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| T |
49494008 |
gaggaaaccgaatattgccaccaagatgatgattgtggctatgattctgcaaattaggcttaaaatgcagttgaacatgcatccgcaacagct |
49493916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 37730337 - 37730210
Alignment:
| Q |
91 |
ttgacggaaagatcatactgaagtgtgttgttatttgtgaaattgaattgagtaagtgatgcctccgtaacggtgaacttgagggcgttaggacgcacga |
190 |
Q |
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||||| ||||||||||| | || ||||||||| ||||||||||||||| ||||||| ||||| ||| ||||| |||| |||||| ||| || ||||| | |
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| T |
37730337 |
ttgacagaaagatcatagttaaatgtgttgttgtttgtgaaattgaatagagtaagggatgcttccctaacgctgaatttgaggacgtccgggcgcacaa |
37730238 |
T |
|
| Q |
191 |
taagccagaagaggaaaccgaagattgc |
218 |
Q |
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||| | | ||||||||||| | |||||| |
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| T |
37730237 |
taacctaaaagaggaaaccaatgattgc |
37730210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 25165862 - 25166002
Alignment:
| Q |
6 |
aaacctaacatctttattaaatgaaagtgtttcgatgttattgtaatagacactaactcttctattagggtttctgattgtgagtttgacggaaagatca |
105 |
Q |
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||||||||||||||| | ||| | || |||||||||||||| ||| ||| || |||| |||| |||||||||| ||| |||| |||| | ||||| |
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| T |
25165862 |
aaacctaacatctttgtaaaaggcaactgtttcgatgttatcgtagcagataccaactattctgttagggtttcggatcgtgatattgagagcaagattg |
25165961 |
T |
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| Q |
106 |
tactgaagtgtgttgttatttgtgaaattgaattgagtaag |
146 |
Q |
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| T |
25165962 |
tagttaagtgtgttgttgtttgtgaaattgaattgagtaag |
25166002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25157657 - 25157735
Alignment:
| Q |
1 |
gaactaaacctaacatctttattaaatgaaagtgtttcgatgttattgtaatagacactaactcttctattagggtttc |
79 |
Q |
| |
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|||| ||||||||||||||||| ||| ||| ||||||||||||| ||||||| || |||||||| ||||||||||| |
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| T |
25157657 |
gaaccaaacctaacatctttataaaacacaagggtttcgatgttatcataatagataccaactcttcgattagggtttc |
25157735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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