View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0435_low_12 (Length: 329)

Name: NF0435_low_12
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0435_low_12
NF0435_low_12
[»] chr7 (6 HSPs)
chr7 (96-318)||(41792243-41792466)
chr7 (96-206)||(35105154-35105264)
chr7 (128-195)||(22915820-22915887)
chr7 (131-192)||(42481924-42481985)
chr7 (112-223)||(38453329-38453440)
chr7 (120-172)||(15019450-15019502)
[»] chr4 (9 HSPs)
chr4 (103-179)||(7206305-7206381)
chr4 (112-172)||(8849520-8849580)
chr4 (150-194)||(25318830-25318874)
chr4 (107-167)||(47733591-47733651)
chr4 (101-205)||(11302392-11302498)
chr4 (127-206)||(47514216-47514295)
chr4 (128-179)||(48575408-48575459)
chr4 (128-204)||(46382769-46382845)
chr4 (112-148)||(53796393-53796429)
[»] chr1 (6 HSPs)
chr1 (101-208)||(3887432-3887540)
chr1 (155-226)||(35198954-35199025)
chr1 (128-166)||(41521705-41521743)
chr1 (139-204)||(30220232-30220297)
chr1 (149-206)||(41178824-41178881)
chr1 (149-189)||(31844312-31844352)
[»] chr3 (6 HSPs)
chr3 (96-248)||(25129518-25129670)
chr3 (95-206)||(32111990-32112101)
chr3 (101-206)||(40339222-40339327)
chr3 (147-206)||(41115392-41115451)
chr3 (112-191)||(46870432-46870511)
chr3 (149-204)||(49829088-49829143)
[»] chr2 (9 HSPs)
chr2 (107-206)||(4007192-4007291)
chr2 (101-204)||(36306963-36307066)
chr2 (96-168)||(21234446-21234518)
chr2 (96-179)||(10918579-10918662)
chr2 (127-206)||(21234535-21234614)
chr2 (112-179)||(36937205-36937272)
chr2 (112-203)||(42650270-42650361)
chr2 (127-194)||(22882781-22882848)
chr2 (132-206)||(43717320-43717394)
[»] chr6 (3 HSPs)
chr6 (96-206)||(34800794-34800903)
chr6 (127-166)||(16441981-16442020)
chr6 (129-179)||(2556511-2556561)
[»] chr5 (8 HSPs)
chr5 (96-226)||(23647600-23647730)
chr5 (96-226)||(23810843-23810973)
chr5 (96-206)||(32421911-32422021)
chr5 (127-206)||(5970030-5970109)
chr5 (96-166)||(16572944-16573014)
chr5 (96-206)||(5465449-5465558)
chr5 (106-179)||(32470567-32470640)
chr5 (112-179)||(6095326-6095393)
[»] chr8 (3 HSPs)
chr8 (96-206)||(38516246-38516356)
chr8 (118-202)||(24183748-24183832)
chr8 (127-172)||(24776370-24776415)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 41792466 - 41792243
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41792466 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 41792367  T
Q  196 gaatcaattctccttcatatcattcaaacatnnnnnnntcaattctacaacctgaatcaccccctccattttt-gagaagnnnnnnnnngatatgtctat 294  Q
    ||||||| |||||||||||||||||||||||       ||||||||| |||||||||||| |||||||||||| || |           |||||||||||    
T  41792366 gaatcaactctccttcatatcattcaaacataataaaatcaattctagaacctgaatcacaccctccatttttggaaacaaaaaaaaaagatatgtctat 41792267  T
Q  295 gtgtatctctttataactgtcacc 318  Q
    ||||||||||||||||||||||||    
T  41792266 gtgtatctctttataactgtcacc 41792243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 35105264 - 35105154
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    |||| ||||||||||  |||| |||||| | |||||| | || ||||||| | |||| |||||||||||| ||||||||||||| || || ||||||||     
T  35105264 atttatgtttggatgtttttatgtaaaagtggatttatcgatgaatttaaggctaaagtcaattgtagaaaccaaaaactacaaattatagcttcaagta 35105165  T
Q  196 gaatcaattct 206  Q
    |||||||||||    
T  35105164 gaatcaattct 35105154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 22915820 - 22915887
Alignment:
Q  128 atttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    ||||| ||||||||| || |||||||||||||||||||| |||||| ||||| | |||||||| ||||    
T  22915820 atttagcaataaattcaaggttaaaatcaattgtagaagtcaaaaattacaaatgttaacttcgagtg 22915887  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 42481924 - 42481985
Alignment:
Q  131 taacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaa 192  Q
    |||||||||||| || | ||| ||||||||||  ||||||||||||||| ||||||||||||    
T  42481924 taacaataaattcaaggctaagatcaattgtaagagccaaaaactacaaattttaacttcaa 42481985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 38453440 - 38453329
Alignment:
Q  112 atttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattctccttc 211  Q
    ||||| |||||| | |||||| |||| ||||||| | |||||||||||||||||| |||||  ||||| |   | |||||||| ||||||||||| |||     
T  38453440 atttatgtaaaagtggatttatcaatgaatttaaggctaaaatcaattgtagaagtcaaaagttacaaatagcagcttcaagtagaatcaattctacttt 38453341  T
Q  212 atatcattcaaa 223  Q
    | ||||| ||||    
T  38453340 aaatcatccaaa 38453329  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 15019450 - 15019502
Alignment:
Q  120 aaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaa 172  Q
    |||||| | |||||||| |||| |||||||||| ||||||||||||| |||||    
T  15019450 aaaaatggttttaacaacaaatctaaagttaaagtcaattgtagaaggcaaaa 15019502  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 7206381 - 7206305
Alignment:
Q  103 tttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaa 179  Q
    |||||||| ||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  7206381 tttggatgtatttatgtaaaactagatttaacaataaatttaaggctaaaatcaattgtagaagccaaaagctacaa 7206305  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 8849520 - 8849580
Alignment:
Q  112 atttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaa 172  Q
    ||||| |||||||| ||||||||||||||||||| |  |||||||||||| ||||||||||    
T  8849520 atttatgtaaaaatggatttaacaataaatttaagggcaaaatcaattgtggaagccaaaa 8849580  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 25318874 - 25318830
Alignment:
Q  150 aaaatcaattgtagaagccaaaaactacaagttttaacttcaagt 194  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  25318874 aaaatcaattgtagaagtcaaaaactacaaattttaacttcaagt 25318830  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 47733591 - 47733651
Alignment:
Q  107 gatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagc 167  Q
    |||| ||||| |||||| ||||||||| ||||||||||| | ||||||||||| |||||||    
T  47733591 gatgtatttatgtaaaattagatttaataataaatttaaggctaaaatcaattatagaagc 47733651  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 11302498 - 11302392
Alignment:
Q  101 tgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactac--aagttttaacttcaagtggaa 198  Q
    |||||||||| ||||  |||||| |  |||| || |||||||||| | ||||||||| |||||||||||||| ||||  || || || |||||||| |||    
T  11302498 tgtttggatgtatttgtgtaaaagtgaatttgacgataaatttaatgctaaaatcaagtgtagaagccaaaagctacaaaaattctagcttcaagtagaa 11302399  T
Q  199 tcaattc 205  Q
    |||||||    
T  11302398 tcaattc 11302392  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 47514216 - 47514295
Alignment:
Q  127 gatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattct 206  Q
    ||||||||||||||||||| | || |||  |||||||||| ||||| ||| || || |||||||||||  ||||||||||    
T  47514216 gatttaacaataaatttaaggctagaattcattgtagaaggcaaaagctataaattgtaacttcaagtaaaatcaattct 47514295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 48575459 - 48575408
Alignment:
Q  128 atttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaa 179  Q
    |||||||||||||||| || |||||||||||||||||||  |||| ||||||    
T  48575459 atttaacaataaattttaaattaaaatcaattgtagaagttaaaagctacaa 48575408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 46382845 - 46382769
Alignment:
Q  128 atttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaatt 204  Q
    |||| ||||||||||||||  |||||| ||| ||||||||||||||| |||| || ||| | || || |||||||||    
T  46382845 attttacaataaatttaaaactaaaattaatcgtagaagccaaaaacaacaaattctaaatccatgtagaatcaatt 46382769  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 53796393 - 53796429
Alignment:
Q  112 atttaagtaaaaatagatttaacaataaatttaaagt 148  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  53796393 atttatgtaaaaatggatttaacaataaatttaaagt 53796429  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 208
Target Start/End: Original strand, 3887432 - 3887540
Alignment:
Q  101 tgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaac-ttcaagtggaat 199  Q
    |||||||||| ||||| |||||| | ||||||| ||||||||||| | |||||||||||||||||||||||| |||||| || || | || |||| ||||    
T  3887432 tgtttggatgtatttatgtaaaagtggatttaataataaatttaaggctaaaatcaattgtagaagccaaaagctacaaattctagcttttaagtagaat 3887531  T
Q  200 caattctcc 208  Q
    |||||||||    
T  3887532 caattctcc 3887540  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 35199025 - 35198954
Alignment:
Q  155 caattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattctccttcatatcattcaaacat 226  Q
    ||||| |||||| ||||| |||||| ||||||||| |||| ||||||||||||||||| |||||||||||||    
T  35199025 caattatagaaggcaaaagctacaatttttaactttaagttgaatcaattctccttcaaatcattcaaacat 35198954  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 41521705 - 41521743
Alignment:
Q  128 atttaacaataaatttaaagttaaaatcaattgtagaag 166  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  41521705 atttaacaataaatttaaagataaaatcaattgtagaag 41521743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 30220232 - 30220297
Alignment:
Q  139 aatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaatt 204  Q
    ||||||| | ||||||||||||||||||| || |||||||| || || |||||||| |||||||||    
T  30220232 aatttaagggtaaaatcaattgtagaagcaaagaactacaaattatagcttcaagtagaatcaatt 30220297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 41178881 - 41178824
Alignment:
Q  149 taaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattct 206  Q
    ||||||||||| ||||||| ||||||||||| || || |||||||| | |||||||||    
T  41178881 taaaatcaattatagaagcaaaaaactacaaattctagcttcaagtaggatcaattct 41178824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 31844312 - 31844352
Alignment:
Q  149 taaaatcaattgtagaagccaaaaactacaagttttaactt 189  Q
    |||||||||||||||||| ||| |||||||| |||||||||    
T  31844312 taaaatcaattgtagaagtcaataactacaaattttaactt 31844352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 248
Target Start/End: Original strand, 25129518 - 25129670
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    |||| |||||||||| ||||| |||||| | ||||||||||||||||  | | ||||||||||| ||||||||||||| |||||  | ||  || ||||     
T  25129518 atttatgtttggatgtatttatgtaaaagtggatttaacaataaattggaggctaaaatcaattatagaagccaaaaattacaaactatatgtttaagta 25129617  T
Q  196 gaatcaattctccttcatatcattcaaacatnnnnnnntcaattctacaacct 248  Q
    |||||||||| |||| | ||||| |||||||       |||||||||||||||    
T  25129618 gaatcaattcacctttaaatcatccaaacatgataaaatcaattctacaacct 25129670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 32112101 - 32111990
Alignment:
Q  95 aatttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagt 194  Q
    ||||| |||||||||  ||||| |||||| | ||||||||||| |||||||   ||||||||||| || ||||||||| |||||| || || ||||||||    
T  32112101 aatttatgtttggatttatttatgtaaaagtggatttaacaatgaatttaagtctaaaatcaattctaaaagccaaaagctacaaattgtagcttcaagt 32112002  T
Q  195 ggaatcaattct 206  Q
     |||||||||||    
T  32112001 agaatcaattct 32111990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 40339327 - 40339222
Alignment:
Q  101 tgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatc 200  Q
    |||||||||  ||||| |||||| |  ||| ||||||||||| || | ||||||||||||||||||| |||| |||||| || || |||||||| |||||    
T  40339327 tgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggctaaaatcaattgtagaagcaaaaagctacaaattgtagcttcaagtagaatc 40339228  T
Q  201 aattct 206  Q
    ||||||    
T  40339227 aattct 40339222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 41115392 - 41115451
Alignment:
Q  147 gttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattct 206  Q
    |||||||||||||||||||||||||| |||||| || || |||||||| |||||||||||    
T  41115392 gttaaaatcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaattct 41115451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 46870511 - 46870432
Alignment:
Q  112 atttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttca 191  Q
    |||||||||||| | |||| |||||||||||||| |||| |||||||| || || | ||||  ||||| |||||||||||    
T  46870511 atttaagtaaaagttgattgaacaataaatttaatgttataatcaattctataaacaaaaagttacaaattttaacttca 46870432  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 49829088 - 49829143
Alignment:
Q  149 taaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaatt 204  Q
    ||||||||||||||||||| || |||||||| || || |||||||| |||||||||    
T  49829088 taaaatcaattgtagaagctaagaactacaaattgtagcttcaagtagaatcaatt 49829143  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 4007192 - 4007291
Alignment:
Q  107 gatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattct 206  Q
    |||| ||||| |||||| | |||||| |||| ||||||| | |||||||||||| ||||| |||||||||||| || |||||| |||| |||||||||||    
T  4007192 gatgtatttatgtaaaagtggatttatcaatgaatttaaggctaaaatcaattgcagaaggcaaaaactacaaattgtaacttaaagtagaatcaattct 4007291  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 36307066 - 36306963
Alignment:
Q  101 tgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatc 200  Q
    |||||| ||| |||||  ||||| | ||||||||||||||||||| | |||||||||||||||||| ||||| ||| || || || || ||||| |||||    
T  36307066 tgtttgtatgtatttatataaaagtggatttaacaataaatttaaggctaaaatcaattgtagaagacaaaagctataaattgtagctccaagtagaatc 36306967  T
Q  201 aatt 204  Q
    ||||    
T  36306966 aatt 36306963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 21234446 - 21234518
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagcc 168  Q
    |||| |||||||||| ||||| || ||| | ||||| |||||||| |||| ||||||||||||||||||||||    
T  21234446 atttatgtttggatgtatttatgtgaaagtggatttgacaataaacttaaggttaaaatcaattgtagaagcc 21234518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 10918662 - 10918579
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaa 179  Q
    |||| |||||||||| ||||  |||||| | ||||| ||||||||||||| | ||||| || ||||||||||||||| ||||||    
T  10918662 atttatgtttggatgtatttgtgtaaaagtggatttgacaataaatttaaggctaaaaccatttgtagaagccaaaagctacaa 10918579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 21234535 - 21234614
Alignment:
Q  127 gatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattct 206  Q
    ||||| |||||||| ||||  ||| | ||||||||||||||||||| |||||| || || |||||||| |||||||||||    
T  21234535 gatttgacaataaaattaagattacagtcaattgtagaagccaaaagctacaaattctagcttcaagtagaatcaattct 21234614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 36937205 - 36937272
Alignment:
Q  112 atttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaa 179  Q
    |||||||||||| || ||| ||||||||||| || | |||||||||||||||||| ||||| ||||||    
T  36937205 atttaagtaaaagtatattgaacaataaattcaaggctaaaatcaattgtagaagtcaaaatctacaa 36937272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 203
Target Start/End: Complemental strand, 42650361 - 42650270
Alignment:
Q  112 atttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaat 203  Q
    ||||| |||||| | |||||| |||| ||| ||| | |||||||||||| ||||| ||||| |||||| || ||||||||||| ||||||||    
T  42650361 atttatgtaaaagttgatttagcaattaatctaaggctaaaatcaattggagaagacaaaagctacaaattataacttcaagtagaatcaat 42650270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 22882848 - 22882781
Alignment:
Q  127 gatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagt 194  Q
    ||||||||||||| ||||| |||| ||||||||| ||||  ||||||||| || || |||||||||||    
T  22882848 gatttaacaataattttaaggttacaatcaattgaagaaagcaaaaactataaattctaacttcaagt 22882781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 43717394 - 43717320
Alignment:
Q  132 aacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattct 206  Q
    ||||||||||| || | |||||||||||||| |||| | || |||||| || || |||||||| |||||||||||    
T  43717394 aacaataaattcaatgctaaaatcaattgtaaaagcaagaagctacaaattctagcttcaagtagaatcaattct 43717320  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 34800794 - 34800903
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    |||| |||||||||| ||||   ||||| | ||||| ||||||||||||| |||||||||||  ||||||||| |||||||||| || || |||||||||    
T  34800794 atttatgtttggatgtatttgcataaaagtggatttgacaataaatttaaggttaaaatcaagcgtagaagcc-aaaactacaaattctagcttcaagtg 34800892  T
Q  196 gaatcaattct 206  Q
     ||||||||||    
T  34800893 aaatcaattct 34800903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 16442020 - 16441981
Alignment:
Q  127 gatttaacaataaatttaaagttaaaatcaattgtagaag 166  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  16442020 gatttaacaataaatttaaagataaaatcaattgtagaag 16441981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 2556511 - 2556561
Alignment:
Q  129 tttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaa 179  Q
    ||||||||||||||||| ||||||||||| | ||||||  |||||||||||    
T  2556511 tttaacaataaatttaatgttaaaatcaaatatagaagtgaaaaactacaa 2556561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 226
Target Start/End: Complemental strand, 23647730 - 23647600
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    |||| |||||||||| ||||| |||||| | |||||| | |||||||||| |||| ||||||||||||||| |||||   |||| || || ||||||||     
T  23647730 atttatgtttggatgtatttacgtaaaagtggatttagccataaatttaaggttataatcaattgtagaagtcaaaagtaacaaattgtagcttcaagta 23647631  T
Q  196 gaatcaattctccttcatatcattcaaacat 226  Q
    ||||||||| | ||| | ||||| |||||||    
T  23647630 gaatcaattttactttacatcatccaaacat 23647600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 23810843 - 23810973
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    |||| |||||||||| ||||| |||||| | |||||| | |||||||||| |||| ||||||||||||||| |||||   |||| || || ||||||||     
T  23810843 atttatgtttggatgtatttacgtaaaagtggatttagccataaatttaaggttataatcaattgtagaagtcaaaagtaacaaattgtagcttcaagta 23810942  T
Q  196 gaatcaattctccttcatatcattcaaacat 226  Q
    ||||||||| | ||| | ||||| |||||||    
T  23810943 gaatcaattttactttacatcatccaaacat 23810973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 32421911 - 32422021
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    |||| |||||||||| ||||| |||||| |  ||||| |||| ||||||| | |||||||||||||||||||||||  |||||| || || |||||||      
T  32421911 atttatgtttggatgtatttatgtaaaagtgaatttatcaatgaatttaaggctaaaatcaattgtagaagccaaatgctacaaattgtagcttcaagga 32422010  T
Q  196 gaatcaattct 206  Q
    |||||||||||    
T  32422011 gaatcaattct 32422021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 5970030 - 5970109
Alignment:
Q  127 gatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaattct 206  Q
    |||||||| |||||||||| | ||||||||| |||||||||||||| || ||| || ||||||||||| ||||| |||||    
T  5970030 gatttaaccataaatttaaggctaaaatcaactgtagaagccaaaagctgcaaattctaacttcaagtagaatccattct 5970109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 16572944 - 16573014
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaag 166  Q
    |||| ||||| |||| ||||| |||||  ||||||||| ||||||||||| ||||||||||||||||||||    
T  16572944 atttatgtttagatgtatttatgtaaacgtagatttaataataaatttaaggttaaaatcaattgtagaag 16573014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 5465449 - 5465558
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    |||| ||||| |||| ||||| |||||||| |||||| |||| ||||||| | |||  ||||  |||||||||||||||||||| || || ||||||||     
T  5465449 atttatgtttagatgtatttatgtaaaaattgatttatcaatgaatttaaggctaat-tcaacagtagaagccaaaaactacaaattgtagcttcaagta 5465547  T
Q  196 gaatcaattct 206  Q
    |||| ||||||    
T  5465548 gaattaattct 5465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 32470640 - 32470567
Alignment:
Q  106 ggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaa 179  Q
    ||||| ||||| ||||||||  |||||| | |||||||||| ||||||||||||| | ||||||||||| ||||    
T  32470640 ggatgtatttatgtaaaaatgaatttaaaagtaaatttaaaattaaaatcaattgcataagccaaaaacaacaa 32470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 6095326 - 6095393
Alignment:
Q  112 atttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaa 179  Q
    ||||| ||||||||  |||||||||| ||||||  | |||||| || |||||||||||||||||||||    
T  6095326 atttatgtaaaaatgaatttaacaatgaatttatggctaaaataaaatgtagaagccaaaaactacaa 6095393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 38516356 - 38516246
Alignment:
Q  96 atttgtgtttggatgaatttaagtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtg 195  Q
    |||| |||||||||| ||||| |||||||||| ||||||||| ||||||| | ||| ||| |||||||||   ||||| || || || || ||||||||     
T  38516356 atttatgtttggatgtatttatgtaaaaatagttttaacaatgaatttaaggctaagatcgattgtagaaataaaaaattagaaattgtagcttcaagta 38516257  T
Q  196 gaatcaattct 206  Q
    |||||||||||    
T  38516256 gaatcaattct 38516246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 24183832 - 24183748
Alignment:
Q  118 gtaaaaatagatttaacaataaatttaaagttaaaatcaattgtagaagccaaaaactacaagttttaacttcaagtggaatcaa 202  Q
    |||||| | |||||| |||||||||||||| ||||||||||| || | ||||||||||| || || || |||||||| |||||||    
T  24183832 gtaaaagtggatttatcaataaatttaaagctaaaatcaattatatatgccaaaaactataaattatagcttcaagtagaatcaa 24183748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 24776415 - 24776370
Alignment:
Q  127 gatttaacaataaatttaaagttaaaatcaattgtagaagccaaaa 172  Q
    |||||||||||||| |||| | |||||||||||||||||| |||||    
T  24776415 gatttaacaataaaattaagggtaaaatcaattgtagaagtcaaaa 24776370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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