View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0435_low_16 (Length: 302)
Name: NF0435_low_16
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0435_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 15517851 - 15518005
Alignment:
| Q |
81 |
gttgttggtttgtatatatgttgctttgatcagtacgtaataagaagaaaaaatgtgaaaattgaacctgcacatatcatacatttatatactccctcac |
180 |
Q |
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| T |
15517851 |
gttgttggcttgtatatatgttgctttgatcagtatgtaataaaaagaaaaaatgtgaaaattgaacctgcacatagcatacatttatacactccctcac |
15517950 |
T |
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| Q |
181 |
ttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttctg |
239 |
Q |
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| T |
15517951 |
ttcatatttatctat----acacaaattaatttccctcattcaaaatattgagtttctg |
15518005 |
T |
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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 22301323 - 22301226
Alignment:
| Q |
138 |
aaaattgaacctgcacatatcatacatttatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagtttc |
237 |
Q |
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| T |
22301323 |
aaaattgaacctgcacatagcatacatttaaatactccctcacttcatatttatctat----acacatattattttttctcatccaaaatattgagtttc |
22301228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 12141874 - 12141808
Alignment:
| Q |
166 |
tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagttt |
236 |
Q |
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| T |
12141874 |
tatatactccctcacttcatatttatctacat----acaaattattttccctcatccaaaatattgagttt |
12141808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 26703240 - 26703174
Alignment:
| Q |
166 |
tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagttt |
236 |
Q |
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|||||||||||||||||| ||||||||||| || ||||||| |||| ||||||||||||||||||||| |
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| T |
26703240 |
tatatactccctcacttcttatttatctat----actcaaattattttctctcatccaaaatattgagttt |
26703174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 26972973 - 26972907
Alignment:
| Q |
166 |
tatatactccctcacttcatatttatctatattcacacaaattaatttccctcatccaaaatattgagttt |
236 |
Q |
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|||||||||||||||||| ||||||||||| || ||||||| |||| ||||||||||||||||||||| |
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| T |
26972973 |
tatatactccctcacttcttatttatctat----actcaaattattttctctcatccaaaatattgagttt |
26972907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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