View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0435_low_2 (Length: 664)

Name: NF0435_low_2
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0435_low_2
NF0435_low_2
[»] chr8 (6 HSPs)
chr8 (91-656)||(15851551-15852117)
chr8 (91-462)||(15858451-15858822)
chr8 (91-462)||(15865519-15865890)
chr8 (93-461)||(15844318-15844688)
chr8 (457-598)||(15858840-15858983)
chr8 (466-655)||(15844715-15844898)
[»] chr4 (1 HSPs)
chr4 (152-252)||(11019477-11019577)
[»] chr2 (9 HSPs)
chr2 (101-204)||(30484791-30484894)
chr2 (146-272)||(30404535-30404661)
chr2 (146-294)||(8378960-8379108)
chr2 (166-294)||(30384998-30385126)
chr2 (140-316)||(23783310-23783486)
chr2 (146-294)||(30395750-30395898)
chr2 (139-197)||(30431413-30431471)
chr2 (407-452)||(30404355-30404400)
chr2 (139-204)||(30425373-30425438)
[»] chr5 (1 HSPs)
chr5 (140-293)||(41626803-41626956)


Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 91 - 656
Target Start/End: Original strand, 15851551 - 15852117
Alignment:
Q  91 cacataattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15851551 cacataattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattcta 15851650  T
Q  191 ggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcacccc 290  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15851651 ggaccccatccaaaagggatatacgaaacttggccttttgtggcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcacccc 15851750  T
Q  291 atagatcttgatcttggtgaatcaaatgtactggtagcgaaacgtgtgttcctccaggtaacaaaagctttccaagtttcaaatcctttcgaagagctcg 390  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15851751 atagatcttgatcttggtgaatcaaatgtactggtagcgaaacttgtgttcctccaggtaacaaaaggtttccaagtttcaaatcctttcgaagagctcg 15851850  T
Q  391 gactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacctatggaaacaaaaaagtttatgtattaatattcatcaaaatg 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  15851851 gactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacctatggaatcagaaaagattatgtattaatattcatcaaaatg 15851950  T
Q  491 aaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgtaaagggtgattatatatctctctttcgacaattgacatgatctcccc 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  15851951 aaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgctaagggtgattatatatctctctttcgacaattgacatgatctcccc 15852050  T
Q  591 taatttccacaagttcacccctcc-ggggattcatggtcctagcgggggttcataccaattcatctc 656  Q
    |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||    
T  15852051 taatttccacaagttccccactccgggggattcatggtcctagcgggggttcataccaattcatctc 15852117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 91 - 462
Target Start/End: Original strand, 15858451 - 15858822
Alignment:
Q  91 cacataattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattcta 190  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15858451 cacataatttggagaaagttcgaatgagaaattctgcagcaacaatgatactgctatctttgcttctaataaggcaaagttttgtccaagacaaattcta 15858550  T
Q  191 ggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcacccc 290  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||| ||||| |||||| ||||||| |||||||||||||||||    
T  15858551 ggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggtttgaactcctttgcatcatcacccc 15858650  T
Q  291 atagatcttgatcttggtgaatcaaatgtactggtagcgaaacgtgtgttcctccaggtaacaaaagctttccaagtttcaaatcctttcgaagagctcg 390  Q
    ||||||| |||||||||||||||||  ||| |||||| ||||  ||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  15858651 atagatcatgatcttggtgaatcaatagtattggtagggaaatttgtgttccttcaggtagcaaaaggtttccaagtttcaaatcctttcgaagagctcg 15858750  T
Q  391 gactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacctatggaaacaaaaa 462  Q
    |   |||  ||||| ||||||| ||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  15858751 gttgaagtaaattaaaggtgggaataaccttagtacctcgtacaaaatcatggtaacctacagaaacaaaaa 15858822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 91 - 462
Target Start/End: Original strand, 15865519 - 15865890
Alignment:
Q  91 cacataattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattcta 190  Q
    ||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15865519 cacataatttggagaaagttcgaatgagaaattctgcagcagcaatgaaattgctatctttgcttctagtaaggcaaagttttgtccaagacaaattcta 15865618  T
Q  191 ggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcacccc 290  Q
    ||||||||||||||||||| ||| |||||||  |||||||| ||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||    
T  15865619 ggaccccatccaaaagggaaataagaaacttttccttttgtagcctttgcaattccttcagcaaacctttcaggtttgaactcctttgcatcatcacccc 15865718  T
Q  291 atagatcttgatcttggtgaatcaaatgtactggtagcgaaacgtgtgttcctccaggtaacaaaagctttccaagtttcaaatcctttcgaagagctcg 390  Q
    ||||||| |||||||||||||||||  ||| |||||| ||||  ||||||||| |||||| | |||  ||||||||||||||||||||||||||||||||    
T  15865719 atagatcatgatcttggtgaatcaatagtattggtagggaaatttgtgttccttcaggtagcgaaacgtttccaagtttcaaatcctttcgaagagctcg 15865818  T
Q  391 gactaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacctatggaaacaaaaa 462  Q
    |   |||  ||||| ||||||| |||||||||||||||| |||| ||||||||||||||||  |||||||||    
T  15865819 gttgaagtaaattaaaggtgggaataaccttagtacctcatacaaaatcatggtaacctataaaaacaaaaa 15865890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 93 - 461
Target Start/End: Original strand, 15844318 - 15844688
Alignment:
Q  93 cataattaggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctagg 192  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15844318 cataattaggagaaagttcaaatgagaaattctgcagcaacaatgatattgctatctttgcttctaataaggtaaagttttgtccaagacaaattctagg 15844417  T
Q  193 accccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccat 292  Q
    |||||||||||| |||| ||| |||||||| |||||||||||||| ||||||||||||| ||||| ||| || ||||||| |||||||||||| ||||||    
T  15844418 accccatccaaaggggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcgggtttgaactcctttgcatcatccccccat 15844517  T
Q  293 agatcttgatcttggtgaatcaaatgtactggtagcgaaacgtgtgttcctccaggtaacaaaagctttccaagtttcaaatcctttcgaagagctcgga 392  Q
    ||||||||||| |||||||||||   || |||||| | ||| | |||||||   || | |||||| ||||||||||||||||||||| ||| ||||||      
T  15844518 agatcttgatcatggtgaatcaatactattggtagggcaacatttgttcctgtgggcagcaaaagttttccaagtttcaaatccttttgaacagctcgat 15844617  T
Q  393 ctaagccaattataggtgggtataaccttagtacctcgtacagaatcatggtaacc--tatggaaacaaaa 461  Q
      |||  ||||| ||| ||||||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  15844618 tgaagtaaattacaggagggtataaccttagtacctcgtacaaaatcatggtaacctatatggaaacaaaa 15844688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 457 - 598
Target Start/End: Original strand, 15858840 - 15858983
Alignment:
Q  457 caaaaaagtttatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgtaaagggtgattat 556  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||||   |||||||||||| |||| ||||| ||||||||||||    
T  15858840 caaaaaggattatgtattaataatcatcaaaatgaaattgtgtgattaaaaatgatcttcttgtgtcaaattttcatgtgacattgttaagggtgattat 15858939  T
Q  557 atatct--ctctttcgacaattgacatgatctcccctaatttcc 598  Q
     |||||  ||||||  |||||||| ||||||| |||||||||||    
T  15858940 gtatctcgctcttttaacaattgaaatgatctaccctaatttcc 15858983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 466 - 655
Target Start/End: Original strand, 15844715 - 15844898
Alignment:
Q  466 ttatgtattaatattcatcaaaatgaaattgtgtgattaaaaacgatcttctcacgtcaaattttcaagtgaaattgtaaagggtgattatatatctctc 565  Q
    ||||||||||||| |||||||||||||| | ||||||||||||  |||||||   ||| |||||||| |||| |||  | | || ||||||  |||||||    
T  15844715 ttatgtattaataatcatcaaaatgaaactatgtgattaaaaattatcttcttgtgtccaattttcacgtgacatt-aataaggagattatgaatctctc 15844813  T
Q  566 tttcgacaattgacatgatctcccctaatttccacaagttcacccctccggggattcatggtcctagcgggggttcataccaattcatct 655  Q
    | || | |||||||||||| | ||||||||||||||| |||  |||||| ||    |||||||||||||||| ||||||| |||||||||    
T  15844814 tctcaataattgacatgatgt-ccctaatttccacaatttccaccctccagg----catggtcctagcggggattcatacgaattcatct 15844898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 11019577 - 11019477
Alignment:
Q  152 gcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcag 251  Q
    |||||||||||  ||||||||||||||| ||||| ||| ||||||||||||||||| |  || ||||||| ||| ||||||||||||| || ||||||||    
T  11019577 gcttctaataaaccaaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcag 11019478  T
Q  252 a 252  Q
    |    
T  11019477 a 11019477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 30484894 - 30484791
Alignment:
Q  101 ggagaaagttcgaatgagaaattctgcagcaacagtgatattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatc 200  Q
    ||||||||||| |||||||||| |||||  | || || |||||| ||||||||||| || | || |||||||||||||| ||||||||||||||||| ||    
T  30484894 ggagaaagttcaaatgagaaatgctgcaaaatcaatgttattgccatctttgcttccaacatggaaaagttttgtccaatacaaattctaggaccccctc 30484795  T
Q  201 caaa 204  Q
    ||||    
T  30484794 caaa 30484791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 30404661 - 30404535
Alignment:
Q  146 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattc 245  Q
    ||||||||||||||||| ||||||||||| || |  |||| |||||||||  | ||||| |||| | |  ||||||||||||||||||| ||||| ||||    
T  30404661 atctttgcttctaataaagcaaagttttgccccatgcaaactctaggaccataaccaaatgggaaaaaacaaacttggccttttgttgcttttgcgattc 30404562  T
Q  246 cttcagaaaaccgttcaggattgaact 272  Q
    |||| ||||| |  || ||||||||||    
T  30404561 cttccgaaaatctctctggattgaact 30404535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 146 - 294
Target Start/End: Original strand, 8378960 - 8379108
Alignment:
Q  146 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattc 245  Q
    ||||||||||| |||| || |||||||||||| |  |||| ||||||||||| |||||| || | |||   || |   || |||||||| || | |||||    
T  8378960 atctttgcttccaatagggaaaagttttgtcccatgcaaactctaggaccccctccaaatggaaaatatataaatctaccatttgttgctttggaaattc 8379059  T
Q  246 cttcagaaaaccgttcaggattgaacttctttgcatcatcaccccatag 294  Q
    |||||| ||| |  |||||||||||| ||||||||||||||||||||||    
T  8379060 cttcagcaaatctctcaggattgaacatctttgcatcatcaccccatag 8379108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 166 - 294
Target Start/End: Complemental strand, 30385126 - 30384998
Alignment:
Q  166 aaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattccttcagaaaaccgttcagga 265  Q
    ||||||||||||||  ||||||| ||||||||||||||| || | | | ||||||   || |||||||| || | ||||||| || |||| | |||||||    
T  30385126 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccaaaaaatctttcagga 30385027  T
Q  266 ttgaacttctttgcatcatcaccccatag 294  Q
    |||||| | || |||||||||||||||||    
T  30385026 ttgaacattttagcatcatcaccccatag 30384998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 316
Target Start/End: Original strand, 23783310 - 23783486
Alignment:
Q  140 attgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttg 239  Q
    ||||| ||||||||||| || | || ||||||||||||||  || ||||||||||||  |||||| || | ||| |||| |   || |||||||| || |    
T  23783310 attgccatctttgcttccaacagggaaaagttttgtccaatgcagattctaggacccgctccaaacggaaaatatgaaaatctaccgtttgttgctttgg 23783409  T
Q  240 caattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccatagatcttgatcttggtgaatcaaa 316  Q
     ||||||  ||||||| |  |||||||||||  |||| ||||||||||||||||| ||   ||| ||||||||||||    
T  23783410 aaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttcacaatcatggtgaatcaaa 23783486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 294
Target Start/End: Complemental strand, 30395898 - 30395750
Alignment:
Q  146 atctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttgcaattc 245  Q
    ||||||||||| | || || ||||||||||||||  |||||||| |||||||||||||| || | | | ||||||   || |||||||| || | |||||    
T  30395898 atctttgcttccattagggaaaagttttgtccaatgcaaattcttggaccccatccaaatggaaaaaatgaaactctaccatttgttgctttagaaattc 30395799  T
Q  246 cttcagaaaaccgttcaggattgaacttctttgcatcatcaccccatag 294  Q
    || | ||||| |  |||||||||||| | || |||||||| ||||||||    
T  30395798 ctccggaaaatctctcaggattgaacattttagcatcatcgccccatag 30395750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 30431471 - 30431413
Alignment:
Q  139 tattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggacccc 197  Q
    |||||| ||||||||||| || | || ||||||||||||||  ||||||||||||||||    
T  30431471 tattgccatctttgcttccaacatggaaaagttttgtccaattcaaattctaggacccc 30431413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 30404400 - 30404355
Alignment:
Q  407 ggtgggtataaccttagtacctcgtacagaatcatggtaacctatg 452  Q
    ||||||||||||||||||||||| || |||||||| || |||||||    
T  30404400 ggtgggtataaccttagtacctcatagagaatcattgtcacctatg 30404355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 30425438 - 30425373
Alignment:
Q  139 tattgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaa 204  Q
    |||||| ||||||||||| || |  | ||||||||||||||  |||||||||||||||| ||||||    
T  30425438 tattgccatctttgcttccaacatagaaaagttttgtccaatgcaaattctaggaccccctccaaa 30425373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 293
Target Start/End: Original strand, 41626803 - 41626956
Alignment:
Q  140 attgctatctttgcttctaataaggcaaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgttgcctttg 239  Q
    ||||| ||||||||||| ||||  | ||||||||| ||||  || || ||||||||||||||||| || | | | ||||||   || || ||||| || |    
T  41626803 attgccatctttgcttccaatagagaaaagttttgcccaatgcagatcctaggaccccatccaaatggaaaaaatgaaactctaccgttcgttgctttgg 41626902  T
Q  240 caattccttcagaaaaccgttcaggattgaacttctttgcatcatcaccccata 293  Q
     ||||||| ||||||| | ||||||||||||| | || ||||||||||||||||    
T  41626903 aaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccata 41626956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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