View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0435_low_28 (Length: 254)
Name: NF0435_low_28
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0435_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 34071437 - 34071633
Alignment:
| Q |
37 |
acgagggagtggcttgaggtttactttggttcaacgaattaacttctataacaaatgccatacatgagtttgattccaaaatggttgtgaattgtttcaa |
136 |
Q |
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| T |
34071437 |
acgagggagcggcttgaggtttactttggttcgacgaattaactcttataacaa-tgccatatatgagtttgattctaagatggttgtgaattgtttcaa |
34071535 |
T |
|
| Q |
137 |
tcatctatgtacgaatatgtcaaaatttggctttatattacaatatt--taatttggcttaaagtcatgtttagtccaaacaaattggttagcaaaca |
232 |
Q |
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| T |
34071536 |
tcttctatgtacggatatctcaaaatttaactttatattacaatatttataatttggcttaaagtcatgtttagtccaaacgaattggttggcaaaca |
34071633 |
T |
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