View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0435_low_30 (Length: 228)

Name: NF0435_low_30
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0435_low_30
NF0435_low_30
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-145)||(2978-3122)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-108)||(12534-12641)
[»] chr2 (14 HSPs)
chr2 (1-145)||(26583092-26583236)
chr2 (1-139)||(23062989-23063127)
chr2 (3-140)||(24660884-24661021)
chr2 (4-129)||(26884514-26884639)
chr2 (77-138)||(5706698-5706759)
chr2 (68-140)||(21907750-21907822)
chr2 (44-145)||(25181507-25181606)
chr2 (68-145)||(29281368-29281445)
chr2 (72-138)||(23878325-23878391)
chr2 (68-138)||(23089636-23089706)
chr2 (68-140)||(27208322-27208394)
chr2 (68-140)||(27210657-27210729)
chr2 (3-108)||(23264419-23264524)
chr2 (77-145)||(9957-10025)
[»] chr7 (12 HSPs)
chr7 (1-145)||(13742955-13743096)
chr7 (30-143)||(13006706-13006818)
chr7 (29-145)||(12710512-12710627)
chr7 (29-145)||(13123583-13123698)
chr7 (1-139)||(46625265-46625403)
chr7 (3-139)||(13678770-13678906)
chr7 (1-138)||(16676629-16676766)
chr7 (1-138)||(17650865-17651002)
chr7 (79-138)||(12591318-12591377)
chr7 (68-140)||(14320243-14320315)
chr7 (45-138)||(11383462-11383554)
chr7 (68-145)||(16090457-16090534)
[»] chr6 (16 HSPs)
chr6 (1-145)||(29614815-29614956)
chr6 (30-143)||(12167637-12167749)
chr6 (30-143)||(19286546-19286658)
chr6 (30-143)||(19877730-19877842)
chr6 (30-143)||(19786538-19786650)
chr6 (30-143)||(19883506-19883618)
chr6 (1-139)||(25396489-25396627)
chr6 (68-138)||(18799822-18799892)
chr6 (3-140)||(19471946-19472082)
chr6 (77-138)||(34640663-34640724)
chr6 (77-138)||(34647337-34647398)
chr6 (1-129)||(19300359-19300487)
chr6 (68-143)||(25470373-25470448)
chr6 (68-138)||(21565793-21565863)
chr6 (45-108)||(9186841-9186903)
chr6 (77-145)||(20008554-20008622)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-140)||(30205-30344)
[»] scaffold0456 (2 HSPs)
scaffold0456 (5-108)||(305-407)
scaffold0456 (5-108)||(7450-7552)
[»] scaffold1773 (1 HSPs)
scaffold1773 (29-145)||(452-567)
[»] scaffold0138 (1 HSPs)
scaffold0138 (3-139)||(1125-1261)
[»] chr3 (7 HSPs)
chr3 (30-143)||(41455769-41455882)
chr3 (78-138)||(24192274-24192334)
chr3 (1-108)||(13302844-13302951)
chr3 (1-140)||(13324400-13324539)
chr3 (68-138)||(55499728-55499798)
chr3 (44-108)||(13313520-13313583)
chr3 (68-138)||(16802069-16802139)
[»] chr8 (4 HSPs)
chr8 (29-145)||(23865885-23866001)
chr8 (3-139)||(18613529-18613664)
chr8 (3-139)||(21931026-21931162)
chr8 (44-145)||(24321277-24321376)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-108)||(111178-111284)
[»] chr5 (6 HSPs)
chr5 (30-143)||(23527904-23528016)
chr5 (8-140)||(18408553-18408685)
chr5 (44-143)||(34829432-34829530)
chr5 (44-145)||(22460506-22460605)
chr5 (90-145)||(19236294-19236349)
chr5 (52-143)||(20781102-20781192)
[»] chr1 (8 HSPs)
chr1 (30-143)||(41111214-41111326)
chr1 (45-140)||(18712098-18712193)
chr1 (44-129)||(19961538-19961622)
chr1 (44-145)||(20851739-20851838)
chr1 (44-145)||(21705625-21705724)
chr1 (44-145)||(21710167-21710267)
chr1 (77-145)||(20858366-20858434)
chr1 (1-108)||(11157447-11157554)
[»] chr4 (8 HSPs)
chr4 (29-129)||(8046516-8046616)
chr4 (44-129)||(11847453-11847537)
chr4 (78-139)||(14486052-14486113)
chr4 (77-138)||(53483022-53483083)
chr4 (47-139)||(15244566-15244658)
chr4 (44-107)||(27905613-27905675)
chr4 (68-145)||(16147437-16147514)
chr4 (47-139)||(15307471-15307563)
[»] scaffold0117 (1 HSPs)
scaffold0117 (30-145)||(9244-9358)
[»] scaffold0053 (2 HSPs)
scaffold0053 (1-139)||(81826-81964)
scaffold0053 (68-145)||(80097-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (3-140)||(129247-129385)
scaffold0004 (3-139)||(116173-116309)
[»] scaffold0461 (2 HSPs)
scaffold0461 (45-140)||(658-752)
scaffold0461 (45-129)||(7605-7688)
[»] scaffold0090 (1 HSPs)
scaffold0090 (21-140)||(17492-17611)
[»] scaffold0028 (1 HSPs)
scaffold0028 (4-139)||(65413-65548)
[»] scaffold0317 (1 HSPs)
scaffold0317 (3-139)||(663-799)
[»] scaffold0222 (1 HSPs)
scaffold0222 (8-140)||(16083-16215)
[»] scaffold0085 (1 HSPs)
scaffold0085 (44-145)||(4278-4377)
[»] scaffold0031 (2 HSPs)
scaffold0031 (3-139)||(121208-121344)
scaffold0031 (3-139)||(132085-132221)
[»] scaffold0232 (1 HSPs)
scaffold0232 (3-102)||(19059-19158)
[»] scaffold0025 (1 HSPs)
scaffold0025 (78-138)||(15061-15121)
[»] scaffold1061 (1 HSPs)
scaffold1061 (7-108)||(1712-1813)
[»] scaffold0261 (1 HSPs)
scaffold0261 (44-143)||(24178-24276)
[»] scaffold0476 (1 HSPs)
scaffold0476 (68-138)||(3905-3975)
[»] scaffold0094 (1 HSPs)
scaffold0094 (3-108)||(51552-51657)
[»] scaffold0001 (1 HSPs)
scaffold0001 (4-129)||(493650-493775)
[»] scaffold0124 (1 HSPs)
scaffold0124 (68-140)||(34938-35010)
[»] scaffold0034 (1 HSPs)
scaffold0034 (44-143)||(72631-72729)
[»] scaffold0247 (1 HSPs)
scaffold0247 (68-138)||(10683-10753)
[»] scaffold0720 (1 HSPs)
scaffold0720 (44-129)||(3882-3966)
[»] scaffold0483 (1 HSPs)
scaffold0483 (44-129)||(11631-11715)
[»] scaffold0206 (1 HSPs)
scaffold0206 (68-129)||(18060-18121)
[»] scaffold0235 (1 HSPs)
scaffold0235 (45-140)||(15539-15633)
[»] scaffold0453 (1 HSPs)
scaffold0453 (44-107)||(11196-11258)
[»] scaffold0139 (1 HSPs)
scaffold0139 (3-135)||(15604-15735)
[»] scaffold0310 (1 HSPs)
scaffold0310 (94-138)||(6907-6951)
[»] scaffold0169 (1 HSPs)
scaffold0169 (3-39)||(6307-6343)
[»] scaffold0023 (1 HSPs)
scaffold0023 (44-108)||(134820-134882)


Alignment Details
Target: scaffold0634 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 2978 - 3122
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2978 agggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaagaggctgactaaggctcacttcgct 3077  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||||||| | |||||| |||||||||||||||||||| ||||||    
T  3078 taagcgacggctagttcgcttaagcgaccggcttacagtaggtct 3122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 12641 - 12534
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  12641 agggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaagaggctgactaaggctcacttcgct 12542  T
Q  101 taagcgac 108  Q
    ||||||||    
T  12541 taagcgac 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 26583092 - 26583236
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||  |||||||||||| || ||||||||    
T  26583092 agggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcctgcacgaaacaaaagttcagaagaaggctgactaagacttacttcgct 26583191  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||||||| | |||||| |||||||||||||||||||| ||||||    
T  26583192 taagcgacggctagttcgcttaagcgaccggcttacagtaggtct 26583236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 23062989 - 23063127
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| ||||||||||||   |||||||    
T  23062989 agggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaaggtcaacttcgc 23063087  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||| | | |||| |||||||||||||||||||||    
T  23063088 ttaagcgacggctggttcgcttaagcgaccggcttacaga 23063127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 140
Target Start/End: Original strand, 24660884 - 24661021
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | |||||| |||||||||| |||| ||||||||| ||||||||||| |   ||| ||||    
T  24660884 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagtaaaa-ttcaaaaagtggctgactaagaccttctttgctt 24660982  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||| | | | || ||||||||||||||| ||||||    
T  24660983 aagcgacggctggctcgcttaagcgaccggctcacagaa 24661021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 26884514 - 26884639
Alignment:
Q  4 gttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctta 102  Q
    |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| ||||||||||||||||||||| ||||||||    
T  26884514 gttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaagaggctgactaaggctcagttcgctta 26884612  T
Q  103 agcgacagatagttcacttaagcgacc 129  Q
    |||||  | ||| || |||||||||||    
T  26884613 agcgaagggtagctcgcttaagcgacc 26884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 5706759 - 5706698
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  5706759 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacag 5706698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 21907750 - 21907822
Alignment:
Q  68 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| ||||||||||||||||||||||    
T  21907750 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaa 21907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 25181606 - 25181507
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||||||||||||| | |||| ||| |||||||||||  |||| |||||||||||||| | |||||  ||||||||||| |||||||| ||||    
T  25181606 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacactcagttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggt 25181509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 29281368 - 29281445
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||||    
T  29281368 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtct 29281445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 23878325 - 23878391
Alignment:
Q  72 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||| |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||||||||||||    
T  23878325 aaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacag 23878391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 23089706 - 23089636
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| ||||||||||||   ||||||||||||||||    ||||| ||||||||||||||||||||    
T  23089706 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccggcttacag 23089636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 27208394 - 27208322
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27208394 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 27210729 - 27210657
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27210729 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 23264419 - 23264524
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    ||||||||||||| || | ||||||| | ||||||||| | | |||||| |||||||| || ||| ||||||||| |||||||||||| ||| |||||||    
T  23264419 ggttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggc-aaagttcaaaaagtggctgactaagg-tcatcttcgct 23264516  T
Q  101 taagcgac 108  Q
    ||||||||    
T  23264517 taagcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 9957 - 10025
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||||| ||||  |||| || ||||||||||| | |||||| ||||||||||| |||||||| ||||||    
T  9957 aggctgtctaacactcagtttgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtct 10025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 13742955 - 13743096
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||    
T  13742955 agggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcatgcacgaaacaaaagttcagaa---ggctgactaaggctcacttcgct 13743051  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||||||| | |||||| ||||||||||||||||| || ||||||    
T  13743052 taagcgacggctagttcgcttaagcgaccggcttatagtaggtct 13743096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 13006706 - 13006818
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  13006706 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 13006804  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  13006805 agcttacagtaggt 13006818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 12710627 - 12710512
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || ||||||||||    
T  12710627 tagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgac 12710529  T
Q  129 cggcttacagaaggtct 145  Q
    |  ||||||| ||||||    
T  12710528 caacttacagtaggtct 12710512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 13123698 - 13123583
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || ||||||||||    
T  13123698 tagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgac 13123600  T
Q  129 cggcttacagaaggtct 145  Q
    |  ||||||| ||||||    
T  13123599 caacttacagtaggtct 13123583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 46625265 - 46625403
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||| ||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||| ||||| |||||| || ||||||||||| |  |||||||    
T  46625265 agggtcatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaaacaaaa-ttcaaagagtggctgactaagacctacttcgc 46625363  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||| | | | || ||||||||||| |||||||||    
T  46625364 ttaagcgacggctggctcgcttaagcgacctgcttacaga 46625403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 13678770 - 13678906
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |||||||||||| ||| |||||||    
T  13678770 ggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgct 13678867  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||||||| | | |||| |||||||||||||||||||||    
T  13678868 taagcgacggctggttcgcttaagcgaccggcttacaga 13678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 16676629 - 16676766
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |||||||    
T  16676629 agggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaacttcgc 16676727  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    |||||||||   |||||| ||||||||||||||||||||    
T  16676728 ttaagcgacgactagttcgcttaagcgaccggcttacag 16676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17650865 - 17651002
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |||||||    
T  17650865 agggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaacttcgc 17650963  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    |||||||||   |||||| ||||||||||||||||||||    
T  17650964 ttaagcgacgactagttcgcttaagcgaccggcttacag 17651002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 12591377 - 12591318
Alignment:
Q  79 gctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacag 12591318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 14320315 - 14320243
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||||||| ||||||    
T  14320315 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaa 14320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 11383554 - 11383462
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||| |||| ||||    
T  11383554 tcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacag 11383462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 16090457 - 16090534
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| ||||||    
T  16090457 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtct 16090534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 29614956 - 29614815
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||    
T  29614956 agggttatactagttaaaggaaatattatagaatgctcaagaagttccctcatgcacgaaacaaaagttcagaa---ggctgactaaggctcacttcgct 29614860  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||||||| | |||||| |||||||||||| ||||||| ||||||    
T  29614859 taagcgacggctagttcgcttaagcgaccgacttacagtaggtct 29614815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 12167637 - 12167749
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  12167637 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 12167735  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  12167736 agcttacagtaggt 12167749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 19286546 - 19286658
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19286546 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19286644  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  19286645 agcttacagtaggt 19286658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 19877730 - 19877842
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19877730 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19877828  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  19877829 agcttacagtaggt 19877842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 19786650 - 19786538
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||  |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19786650 agaacgctcaagaagtcccctcatgcattaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19786552  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  19786551 agcttacagtaggt 19786538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 19883506 - 19883618
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||| | ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19883506 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctaattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19883604  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  19883605 agcttacagtaggt 19883618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25396489 - 25396627
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| || ||||||||||||||||||||| | | | |||| |||||| |||| | ||||||||||| || |||||||| |  |||||||    
T  25396489 agggttatacaagttgaaagaaacattttagaatgctcaaaaggattccctagtgcactaagc-ataattcaaaaagtggttgactaagacctacttcgc 25396587  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||| | | | || |||||||||||| ||||||||    
T  25396588 ttaagcgacggctggctcgcttaagcgaccgacttacaga 25396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 18799822 - 18799892
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| |||||||||||| | |||||||||||||||| | |||||| ||||||||||||||||||||    
T  18799822 ttcaaaaagtggctgactaaggttgacttcgcttaagcgacggctagttcgcttaagcgaccggcttacag 18799892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 19472082 - 19471946
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| |||||||||||| | ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||| ||| |   ||||||||    
T  19472082 ggttatacaagttgaaggaaacatttcaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgac-aagaccttcttcgctt 19471985  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||  | | | || ||||||||||||||| ||||||    
T  19471984 aagcgatggctggctcgcttaagcgaccggctcacagaa 19471946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 34640724 - 34640663
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  34640724 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacag 34640663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 34647398 - 34647337
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| ||||||||    
T  34647398 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacag 34647337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 19300487 - 19300359
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||| |||| |||||| || | ||| ||||| | | |||||| ||||||||||||||  |||| | |||||||||||||||||||  ||||    
T  19300487 agggttatacaagctaaaagaaacacttaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatagaggctgactaaggctcatctcgc 19300389  T
Q  100 ttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||||  | ||| || |||||||||||    
T  19300388 ttaagcgaagggtagctcgcttaagcgacc 19300359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 25470448 - 25470373
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    |||| ||| ||||||||||||| ||||||||||||||||||   |||||| |||||||||||  ||||||| ||||    
T  25470448 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggt 25470373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 21565863 - 21565793
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| ||||||||||||   ||||||||||||||||    ||||| ||||||||||||||||||||    
T  21565863 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccggcttacag 21565793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 9186841 - 9186903
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgac 108  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||| ||| |||||||||||||||    
T  9186841 tcccctagtgcacgaagcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 20008622 - 20008554
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||||| ||||  |||| ||||||||||| || | |||||| ||||||||||| |||||||| ||||||    
T  20008622 aggctgtctaacactcagttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtct 20008554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 30205 - 30344
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| || ||||||||||||||||||||| | | |||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  30205 agggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccctagtgcacgaagcaaaa-ttcagaaagtggctgactaaggctcacttcgc 30303  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||||  | | | || ||||||||||||||||||||||    
T  30304 ttaagcgaaggttggctcgcttaagcgaccggcttacagaa 30344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 305 - 407
Alignment:
Q  5 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 104  Q
    ||||||||||| || |||| |||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  305 ttatacaagttgaaagaaatattttagaatgctcaagatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaag 403  T
Q  105 cgac 108  Q
    ||||    
T  404 cgac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 7450 - 7552
Alignment:
Q  5 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 104  Q
    ||||||||||| || |||| |||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  7450 ttatacaagttgaaagaaatattttagaatgctcaagatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaag 7548  T
Q  105 cgac 108  Q
    ||||    
T  7549 cgac 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 452 - 567
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | |||||| ||||||||||    
T  452 tagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagttcgcttaagcgac 550  T
Q  129 cggcttacagaaggtct 145  Q
    | |||||||| ||||||    
T  551 cagcttacagtaggtct 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 1125 - 1261
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| | | ||||||||    
T  1125 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccctcttcgctt 1223  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||| | | | || ||||||||||||||| |||||    
T  1224 aagcgacggctggctcgcttaagcgaccggctcacaga 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 41455882 - 41455769
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||| ||||||||||| ||||| |||||| | |||| ||| ||||||||||||| |||||||||||||||||| | |||||| |||||||||||    
T  41455882 agaacgctcaggaagtcccctcatgcactaagcaacagttcagaaaaaggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 41455783  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  41455782 agcttacagtaggt 41455769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 24192274 - 24192334
Alignment:
Q  78 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||  ||||||||||||||||| | |||||| ||||||||||||||||||||    
T  24192274 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacag 24192334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13302951 - 13302844
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||| ||||||||||||||||  ||||    
T  13302951 agggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaagtggctgactaaggctcagctcgc 13302853  T
Q  100 ttaagcgac 108  Q
    |||||||||    
T  13302852 ttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 13324539 - 13324400
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||| ||||||||||||||||  ||||    
T  13324539 agggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaagtggctgactaaggctcagctcgc 13324441  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||||  | | | || |||||||||| ||||| |||||    
T  13324440 ttaagcgaaggctggctcgcttaagcgactggcttgcagaa 13324400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 55499798 - 55499728
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| |||||||||||    ||||||||||||||||   |||||| ||||||||||||||||||||    
T  55499798 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacag 55499728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 13313583 - 13313520
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 108  Q
    |||||||  |||||||||||||| |||| |||| ||||||||||||||||  |||||||||||||    
T  13313583 gtcccctaatgcacgaagcaaaa-ttcagaaagtggctgactaaggctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 16802139 - 16802069
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| |||| |||||||   ||||||||||| |||| | ||| || ||||||||||||||||||||    
T  16802139 ttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccggcttacag 16802069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 23865885 - 23866001
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || ||||||||||    
T  23865885 tagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgac 23865984  T
Q  129 cggcttacagaaggtct 145  Q
    |  ||||||| ||||||    
T  23865985 caacttacagtaggtct 23866001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 18613529 - 18613664
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    ||||||||||||| || | ||||||||  ||||||||||| | |||||| |||||||| |||||  ||||||| | ||| |||||||| ||| |||||||    
T  18613529 ggttatacaagttgaaaggaacatttttaaatgctcaagaggatcccctagtgcacgaggcaaag-ttcaaaa-gtggccgactaagg-tcatcttcgct 18613625  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||||||| | | |||| ||||||||||| |||||||||    
T  18613626 taagcgacggctggttcgcttaagcgacctgcttacaga 18613664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 21931026 - 21931162
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctga-ctaaggctcacttcgc 99  Q
    ||||||||||||| || ||||||||||||||||||| ||| |  | |||| ||| | |||||||||  |||||||| |||||| | |||||   ||||||    
T  21931026 ggttatacaagttgaaagaaacattttagaatgctc-agatggattccctagtggaggaagcaaaa--tcaaaaagtggctgaccaaaggccttcttcgc 21931122  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||  | | ||||||||||||||||| ||||||||    
T  21931123 ttaagcgaaggctggttcacttaagcgaccgacttacaga 21931162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 24321376 - 24321277
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  24321376 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 24321279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 111178 - 111284
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    |||||||||| |||||||||| | ||| ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| |||||||||||    
T  111178 agggttatactagttaaaggagaaattatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgct 111276  T
Q  101 taagcgac 108  Q
    ||||||||    
T  111277 taagcgac 111284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 23527904 - 23528016
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  23527904 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 23528002  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  23528003 agcttacagtaggt 23528016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 18408685 - 18408553
Alignment:
Q  8 tacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcactt-cgcttaagc 105  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| || |||||||||    
T  18408685 tacaagttgaaaggaacatttaaaaatgctcaaaagaatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcattttcgcttaagc 18408588  T
Q  106 gacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||| | |||||  ||||||||||||||||||||||    
T  18408587 gacggctagtttgcttaagcgaccggcttacagaa 18408553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 34829432 - 34829530
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||||||||||||||  |||| ||| ||| ||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||| |||||    
T  34829432 gtcccctagtgcacgaagcaaag-ttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggt 34829530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 22460506 - 22460605
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  22460506 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 22460603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 19236294 - 19236349
Alignment:
Q  90 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||||    
T  19236294 ctcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtct 19236349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 20781102 - 20781192
Alignment:
Q  52 gtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||||||||||| |||| ||| |||||||||||  || | |||||||||||||| | ||| || ||||||||||| ||| ||| |||||    
T  20781102 gtgcacgaagcaaaa-ttcagaaaaaggctgactaacacttagttcgcttaagcgacgggtagctcgcttaagcgaccagctcacacaaggt 20781192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 41111214 - 41111326
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  41111214 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 41111312  T
Q  130 ggcttacagaaggt 143  Q
     |||||||| ||||    
T  41111313 agcttacagtaggt 41111326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 18712098 - 18712193
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||||| |||||||| |||||| ||||||| | |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||| ||||||||||    
T  18712098 tcccctagtgcacgaggcaaaagttcaaaaggtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaa 18712193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 19961538 - 19961622
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||| ||||||||||||||  |||| | |||||||||||||||||||  ||||||||||||  | ||| || |||||||||||    
T  19961538 gtcccctagtgcacgaagcaaag-ttcagatagaggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgacc 19961622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 20851838 - 20851739
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  20851838 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 20851741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 21705625 - 21705724
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21705625 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21705722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 21710167 - 21710267
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||| ||||||||| | |||  ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21710167 gtcccctagtgtacgaagcaaga-ttcggaaaaaggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21710265  T
Q  144 ct 145  Q
    ||    
T  21710266 ct 21710267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 20858434 - 20858366
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||||    
T  20858434 aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtct 20858366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 11157447 - 11157554
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 98  Q
    ||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| || ||| ||||||||| || ||||||||| ||| |||||    
T  11157447 agggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggc-aaagttcaaaaagtggttgactaagg-tcatcttcg 11157544  T
Q  99 cttaagcgac 108  Q
    ||||||||||    
T  11157545 cttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 8046616 - 8046516
Alignment:
Q  29 tagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgac 128  Q
    ||||||||||||||||||||||| ||||| ||| || | |||| ||| ||||||||||||||||||||||||||||||||   ||| || ||||||||||    
T  8046616 tagaatgctcaagaagtcccctcatgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgcttaagcgacgtctagctcgcttaagcgac 8046517  T
Q  129 c 129  Q
    |    
T  8046516 c 8046516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 11847453 - 11847537
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||| |||||| |||||||  |||| |||||||||||||||||||||  ||||||||||||| | |||||| |||||||||||    
T  11847453 gtcccctagtgcacaaagcaaag-ttcagaaagaggctgactaaggctcagctcgcttaagcgacgggtagttcgcttaagcgacc 11847537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 14486052 - 14486113
Alignment:
Q  78 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||||||||||||||||||||||||  | | | || |||||||||||||||||||||    
T  14486052 ggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacaga 14486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 53483022 - 53483083
Alignment:
Q  77 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||| |||||||||||||||||| |  ||||| ||||||||||| ||||||||    
T  53483022 aggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacag 53483083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 15244566 - 15244658
Alignment:
Q  47 ccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| |   ||||| ||||||||| | |   || |||||||||||||||||||||    
T  15244566 ccctagtgcacgaagcaaaatttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggcttacaga 15244658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 27905613 - 27905675
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcga 107  Q
    |||||||  ||||||||||||||||||| |||| |||||||| |||||||  ||||||||||||    
T  27905613 gtcccctaatgcacgaagcaaaaattcagaaagtggctgact-aggctcagctcgcttaagcga 27905675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 16147514 - 16147437
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| ||||||    
T  16147514 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtct 16147437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 15307471 - 15307563
Alignment:
Q  47 ccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||| ||||||||||||||  ||| ||||| ||||||||||| |   ||||||||||||||  | | | || |||||||||||| ||||||||    
T  15307471 ccctagtgcacgaagcaaagtttcgaaaagtggctgactaagaccttcttcgcttaagcgatggctggctcgcttaagcgaccgacttacaga 15307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 9358 - 9244
Alignment:
Q  30 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||||||||||||||||||||| ||||| ||| |||| || | ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||    
T  9358 agaatgctcaagaagtcccctcatgcactaagtaaaagtttagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgacc 9260  T
Q  130 ggcttacagaaggtct 145  Q
      ||||||| ||||||    
T  9259 aacttacagtaggtct 9244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 81964 - 81826
Alignment:
Q  1 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 99  Q
    ||||||||||||||| || ||||||||||| ||||||||| | | | |||| ||| ||||||||||| ||||||||| ||||||||||| |  |||||||    
T  81964 agggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctggtgtacgaagcaaaa-ttcaaaaagtggctgactaagacctacttcgc 81866  T
Q  100 ttaagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||||| | | | || |||||||||||| ||||||||    
T  81865 ttaagcgacggctggctcgcttaagcgaccgacttacaga 81826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 80174 - 80097
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtct 145  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| ||||||    
T  80174 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtct 80097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 140
Target Start/End: Complemental strand, 129385 - 129247
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 100  Q
    ||||||||||||| |||||||||||| | || ||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| |   |||||||    
T  129385 ggttatacaagttgaaggaaacatttcaaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccttcttcgct 129287  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||||||| | | | || ||||||||||||||| ||||||    
T  129286 taagcgacggctggctcgcttaagcgaccggctcacagaa 129247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 116173 - 116309
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    ||||||||| ||| || ||||||||||| ||| ||||| | | |||||| |||||||| |||||  ||||||||  |||||||||||| ||| |||||||    
T  116173 ggttatacaggttgaaagaaacattttaaaatactcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaaatggctgactaagg-tcatcttcgct 116270  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||||||| | | |||| |||||||||||||||||||||    
T  116271 taagcgacggctggttcgcttaagcgaccggcttacaga 116309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 752 - 658
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||||||||||||||    
T  752 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagaa 658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 7688 - 7605
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||    
T  7688 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 17492 - 17611
Alignment:
Q  21 aaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcac 119  Q
    |||| ||||||||||||||| | | || ||| ||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||||||  | | | || |    
T  17492 aaaccttttagaatgctcaaaaggctcgcctagtgcacgaaacaaaa-ttcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgc 17590  T
Q  120 ttaagcgaccggcttacagaa 140  Q
    |||||||||||||||||||||    
T  17591 ttaagcgaccggcttacagaa 17611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 65413 - 65548
Alignment:
Q  4 gttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctta 102  Q
    |||||||||||| || ||||||||||| |||| |||| | | |||||| |||||||| |||||| ||||||||| ||||||||||||    || ||||||    
T  65413 gttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccctagtgcacgaggcaaaa-ttcaaaaagtggctgactaaggtcttctccgctta 65511  T
Q  103 agcgacagatagttcacttaagcgaccggcttacaga 139  Q
    || ||| | | |||| |||||||||||||||||||||    
T  65512 agtgacggctggttcgcttaagcgaccggcttacaga 65548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 663 - 799
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |||||||||||| ||| |||||||    
T  663 ggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgct 760  T
Q  101 taagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    |||||||| | | |||| |||||||||||||||||||||    
T  761 taagcgacggctggttcgcttaagcgaccggcttacaga 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 16083 - 16215
Alignment:
Q  8 tacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagc 105  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||    
T  16083 tacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagc 16180  T
Q  106 gacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||| | ||| || ||||||||||||||||||||||    
T  16181 gacggttagctcgcttaagcgaccggcttacagaa 16215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 4377 - 4278
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| |||||||||||||  | |||||| ||||||||||| |||||||| ||||    
T  4377 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggt 4280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 121208 - 121344
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |   ||||||||    
T  121208 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagaccttcttcgctt 121306  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||  | | | || ||||||| |||||||||||||    
T  121307 aagcgaaggctggctcgcttaagcaaccggcttacaga 121344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 132085 - 132221
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |   ||||||||    
T  132085 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagaccttcttcgctt 132183  T
Q  102 aagcgacagatagttcacttaagcgaccggcttacaga 139  Q
    ||||||  | | | || ||||||| |||||||||||||    
T  132184 aagcgaaggctggctcgcttaagcaaccggcttacaga 132221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 19158 - 19059
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||| ||||| || ||||||||||| ||||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| | | ||||||||    
T  19158 ggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccctcttcgctt 19060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 15121 - 15061
Alignment:
Q  78 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||  ||||||||||||||||| | |||||| ||||||||||||||||||||    
T  15121 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacag 15061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 1712 - 1813
Alignment:
Q  7 atacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaag 104  Q
    ||||||||| || ||||||||||| ||||||||| | | |||||| |||||||| || ||||||||||||| |||||||||||| ||| |||||||||||    
T  1712 atacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaggc-aaaattcaaaaagtggctgactaagg-tcatcttcgcttaag 1809  T
Q  105 cgac 108  Q
    ||||    
T  1810 cgac 1813  T

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Target: scaffold0261 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 24276 - 24178
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    ||||||| ||||||||||||||  |||| |||||| ||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||| ||| |||||    
T  24276 gtcccctagtgcacgaagcaaag-ttcagaaagagactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgaccagctcacaaaaggt 24178  T

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Target: scaffold0476 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 3975 - 3905
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| ||||||||||||||||||||    
T  3975 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacag 3905  T

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Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 51552 - 51657
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 101  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| |||||| |||| ||||||||||||| ||||||||||| |   ||||||||    
T  51552 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacaaagc-aaaattcaaaaagtggctgactaagaccttcttcgctt 51650  T
Q  102 aagcgac 108  Q
    |||||||    
T  51651 aagcgac 51657  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 493775 - 493650
Alignment:
Q  4 gttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctta 102  Q
    |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| ||| ||||||||||||||||| ||||||||    
T  493775 gttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaaaggctgactaaggctcagttcgctta 493677  T
Q  103 agcgacagatagttcacttaagcgacc 129  Q
    |||||  | ||| || |||||||||||    
T  493676 agcgaagggtagctcgcttaagcgacc 493650  T

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Target: scaffold0124 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 35010 - 34938
Alignment:
Q  68 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| ||||||||||||||||||||||    
T  35010 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaa 34938  T

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Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 72631 - 72729
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 143  Q
    |||||||  ||||||||||||||||||| |||| |||||||| |||||||  ||||||||||||  | ||| || ||||||||||| ||| ||| |||||    
T  72631 gtcccctaatgcacgaagcaaaaattcagaaagtggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggt 72729  T

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Target: scaffold0247 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 10683 - 10753
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||| |||||||||||    |||||||||||||||| | ||| || ||||||||||||||||||||    
T  10683 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacggctagctcgcttaagcgaccggcttacag 10753  T

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Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 3966 - 3882
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||| |||||||||||||   |||||||| ||||||||||| ||||| |||||||||||||  | ||| || |||||||||||    
T  3966 gtcccctagtgcacgaagcaagg-ttcaaaaaaaggctgactaatgctcagttcgcttaagcgaagggtagctcgcttaagcgacc 3882  T

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Target: scaffold0483 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 11715 - 11631
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    ||||||| ||||| ||||||||  |||| | |||||||||||||||||||  ||||||||||||  | |||||| |||||||||||    
T  11715 gtcccctagtgcatgaagcaaag-ttcagatagaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgacc 11631  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 18060 - 18121
Alignment:
Q  68 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 129  Q
    |||| ||| ||||||||||||||||| ||||||||||||| || ||| || |||||||||||    
T  18060 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaaaggtagctcgcttaagcgacc 18121  T

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Target: scaffold0235 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 15633 - 15539
Alignment:
Q  45 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 140  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||  | ||| ||||||||||||| |||| ||||||    
T  15633 tcccctagtgcacgaggcaaat-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagctcacttaagcgactggctcacagaa 15539  T

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Target: scaffold0453 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 11258 - 11196
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcga 107  Q
    ||||||| |||||||||||||   |||| ||| ||||||||||||||||| |||||||||||||    
T  11258 gtcccctagtgcacgaagcaagg-ttcagaaaaaggctgactaaggctcagttcgcttaagcga 11196  T

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Target: scaffold0139 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 15735 - 15604
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgct 100  Q
    ||||||||||||| || ||||||||||  ||||||||| | | || ||| |||||||| || ||| ||| ||||| |||||||||||| ||| |||||||    
T  15735 ggttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcctagtgcacgaggc-aaagttc-aaaagtggctgactaagg-tcatcttcgct 15639  T
Q  101 taagcgacagatagttcacttaagcgaccggctta 135  Q
    |||||||| | | |||| |||||||||||| ||||    
T  15638 taagcgacggttggttcgcttaagcgaccgtctta 15604  T

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Target: scaffold0310 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 6907 - 6951
Alignment:
Q  94 cttcgcttaagcgacagatagttcacttaagcgaccggcttacag 138  Q
    ||||||||||||||| | ||| || ||||||||||||||||||||    
T  6907 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacag 6951  T

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Target: scaffold0169 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 6307 - 6343
Alignment:
Q  3 ggttatacaagttaaaggaaacattttagaatgctca 39  Q
    ||||||||||||| || ||||||||||||||||||||    
T  6307 ggttatacaagttgaaagaaacattttagaatgctca 6343  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 134820 - 134882
Alignment:
Q  44 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 108  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| ||||||||||||||    
T  134820 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgac 134882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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