View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0435_low_9 (Length: 380)
Name: NF0435_low_9
Description: NF0435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0435_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 109 - 227
Target Start/End: Original strand, 11393407 - 11393525
Alignment:
| Q |
109 |
cctttgacatctttaggctctctatttgtctttatcaactcatttagctcatcatatgttaaagcatttggatgtgtatgtgcatgtttgacgaagattt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11393407 |
cctttgacatctttaggctctctatttgtctttatcaactcatttagctcatcatatgttaaagcatttggatgtgtatgtgcatgtttgacgaaaattt |
11393506 |
T |
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| Q |
209 |
cttcaaatttcgatgcaac |
227 |
Q |
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| T |
11393507 |
cttcaaatttcgatgcaac |
11393525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 298 - 368
Target Start/End: Original strand, 11393597 - 11393667
Alignment:
| Q |
298 |
agtaatattaaagaaaaagattataggagattatatttttatttgtatatataacaaccttccttcagaat |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11393597 |
agtaatattaaagaaaaagattataggagattatatttttatttgtatatataacaaccttccttcagaat |
11393667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 19962400 - 19962481
Alignment:
| Q |
1 |
catcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtct |
83 |
Q |
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| T |
19962400 |
catcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttgtct |
19962481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 1971415 - 1971469
Alignment:
| Q |
29 |
accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtct |
83 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1971415 |
accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtct |
1971469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1971367 - 1971415
Alignment:
| Q |
1 |
catcttcctttcctcaacttcctcccctaccccccgtatcaccaccatca |
50 |
Q |
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|||||||||||||||| |||| ||||||| |||||||||||| ||||||| |
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| T |
1971367 |
catcttcctttcctcaccttcttccccta-cccccgtatcacaaccatca |
1971415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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