View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0436_low_1 (Length: 647)
Name: NF0436_low_1
Description: NF0436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0436_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 30 - 330
Target Start/End: Original strand, 27190317 - 27190616
Alignment:
| Q |
30 |
attatgagttacgagttatatattttcggttgatgatagtttattgagataaaaaatgtttcatggacaaccactttttcataaaaacaaggttaattat |
129 |
Q |
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| T |
27190317 |
attatgagttacgagttatatattttcggttgatgatagtttattgagataaaaaatgtttcatggacaaccactttttcataaaaacaaggttaattat |
27190416 |
T |
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| Q |
130 |
gtgaaaaatatggttaatttgatttacattgataattatgggtagttcatgtagttgaatt--attaatcacaaatttggtcgtgaattgggttaacaat |
227 |
Q |
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| T |
27190417 |
gtgaaaaatatggttaatttgatttacattgataattatgggtagtccatgtagttgaattgaattaatcacaaatttgcttttgaattgaattaaaaat |
27190516 |
T |
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| Q |
228 |
ttactcaactgaattaaccacattttttaatgtcgttaactaggtgttttgcgagtgtacaaaaagtaggtgtccatgtatcattactgtattgaaattg |
327 |
Q |
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| T |
27190517 |
ttattcaactgaattaacgacattttttaacgtctttaaccaggtgttt---gagtgtacaaaaagtaggtgtccatgtatcattactgtattgaaattg |
27190613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 403 - 639
Target Start/End: Original strand, 27190687 - 27190923
Alignment:
| Q |
403 |
ggtatggtgtgaaaaaggaggatgaggtctttaaagcagagctttgtgatatatatagacagtgagtgacaaatcaagttactaataggtttttcatttg |
502 |
Q |
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| T |
27190687 |
ggtatggtgtgaaaaaggaggatgaggtctttaaagcagagctttgtgatatatatagagagtgagtgacaaataaagttactattcagtttttcatttg |
27190786 |
T |
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| Q |
503 |
attttacattttcgtgattatgaactctgatgttatgtgagaaatgggtcatgattttctgtatggcttttgaagtttggatttgaatcatgaatttttc |
602 |
Q |
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| T |
27190787 |
attttacattttcatgattaccaactatgaagttatgtgagaaatggttcatgattttctgtatggcttttgaagtttagatttgaatcatgaatttttc |
27190886 |
T |
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| Q |
603 |
acttcgactttttattcagatttgtgtcgtctgtgct |
639 |
Q |
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| T |
27190887 |
acttcgactttttattcaggtttgtgtcgtctgtgct |
27190923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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