View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0436_low_11 (Length: 293)
Name: NF0436_low_11
Description: NF0436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0436_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 108 - 280
Target Start/End: Complemental strand, 11016937 - 11016766
Alignment:
| Q |
108 |
atttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttgatccaaacac |
207 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |
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| T |
11016937 |
atttggtattgcgacatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagctaatatttgtagcttcataattttcaagttgatcc-aacac |
11016839 |
T |
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| Q |
208 |
tcacataatcttttaaaaaatccatttggattggtctgatggtgttgacttagaacacctgatgatctcatct |
280 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11016838 |
tcacataatcttttaaaaaatctatttggattggtctgatggtgttgacttagaacacctgatgatctcatct |
11016766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 11016989 - 11016933
Alignment:
| Q |
29 |
aataaaaataacataaaagaaaagcaactagaaaccaattgacgatagtcgaatttg |
85 |
Q |
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| T |
11016989 |
aataaaaataacataaaagaaaagcaactagaaaccaattgacaatagtcgaatttg |
11016933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 12068027 - 12068061
Alignment:
| Q |
224 |
aaaatccatttggattggtctgatggtgttgactt |
258 |
Q |
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| T |
12068027 |
aaaatccatttggattggtctgatcgtgttgactt |
12068061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 19112669 - 19112588
Alignment:
| Q |
117 |
tgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga |
198 |
Q |
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| T |
19112669 |
tgcggcacatcaaggaaaatcacgttaaaaaatcacatcaaagcaaaagctcatatttgtagcttcataatttccaagttga |
19112588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 47609202 - 47609149
Alignment:
| Q |
132 |
aaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcata |
185 |
Q |
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|
||||||||||| |||| |||||||||||||||||||| || ||||||||||||| |
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| T |
47609202 |
aaaatcacgttaaaaattcacatcaaagcaaaagcttgtatttgtagcttcata |
47609149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 36903613 - 36903693
Alignment:
| Q |
109 |
tttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt |
189 |
Q |
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||||||||| ||| | ||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36903613 |
tttggtattacggtacatcaaacaaaatcacgttagaaaatcacatcaaagcaaaagcttatatttgtagcttcataattt |
36903693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 19155025 - 19155106
Alignment:
| Q |
117 |
tgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga |
198 |
Q |
| |
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|||| ||| ||||| ||||| ||||| |||| |||||||||||||||||||||||||| |||||||||| ||| || ||||| |
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| T |
19155025 |
tgcgacatttcaagaaaaattacgttaaaaattcacatcaaagcaaaagcttataattatagcttcatagtttccacgttga |
19155106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 20909287 - 20909234
Alignment:
| Q |
135 |
atcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt |
189 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||| |
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| T |
20909287 |
atcacgttaaaaaatcacatcaaaggaaaagcttatatttgtagc-tcataattt |
20909234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 26786165 - 26786131
Alignment:
| Q |
226 |
aatccatttggattggtctgatggtgttgacttag |
260 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |
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| T |
26786165 |
aatccatttggattggtctgatggtattgacttag |
26786131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 13876757 - 13876845
Alignment:
| Q |
101 |
atggcctatttggtattgcggcatatcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattt |
189 |
Q |
| |
|
||||||| |||| ||||| || | ||||| |||||||||||| |||||||| || |||||||||||||||| ||||| ||||||||||| |
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| T |
13876757 |
atggcctgtttgatattgtggtacatcaaacaaaatcacgttaaaaaatcatataaaagcaaaagcttatatttgtaacttcataattt |
13876845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 33765026 - 33765098
Alignment:
| Q |
126 |
tcaagcaaaatcacgttcaaaaatcacatcaaagcaaaagcttataattgtagcttcataattttcaagttga |
198 |
Q |
| |
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||||| ||||| || || |||| ||||||||||||||||||| | | ||||||||||||| |||||| ||||| |
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| T |
33765026 |
tcaagtaaaattactttaaaaattcacatcaaagcaaaagctcagatttgtagcttcatagttttcacgttga |
33765098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 15953967 - 15953996
Alignment:
| Q |
229 |
ccatttggattggtctgatggtgttgactt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
15953967 |
ccatttggattggtctgatggtgttgactt |
15953996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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