View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0436_low_12 (Length: 284)
Name: NF0436_low_12
Description: NF0436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0436_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 283
Target Start/End: Complemental strand, 1891579 - 1891311
Alignment:
| Q |
28 |
cataatatgaacacaaaccatcataagcataatattaaa----gagaccaatttcaccaaaactaactaaccgtgaagaaatagaccttggtaatacgga |
123 |
Q |
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| T |
1891579 |
cataatatgaacacaaaccatcataagcataatattaaataaagagaccaatttcaccaaaactaactaaccgtggagaaatagaccttggtaatacgga |
1891480 |
T |
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| Q |
124 |
gtttgattaggaggtaaa---------caatcactatttcatccagagactaaattactactacatctgtgtcttattataagagacaattcacttttca |
214 |
Q |
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| T |
1891479 |
gtttgattaggaggtaaattttgtaaacaatcactatttcatccggagacaaaattactactacatctgtttcttattataagagacaattcacttttcg |
1891380 |
T |
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| Q |
215 |
gttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacctag |
283 |
Q |
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| T |
1891379 |
gttcactgagtaactgatgtatctgatctatcatatagaccagatacatcagttactcaatgaacctag |
1891311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 24986067 - 24985972
Alignment:
| Q |
187 |
cttattataagagacaattcacttttca-gttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacct |
281 |
Q |
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| T |
24986067 |
cttattataagagacaattcactttttaggttcattggataattgatgtatatggtctataatatagatcaaatacatcagttattcaatgaacct |
24985972 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 1891287 - 1891380
Alignment:
| Q |
188 |
ttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaacc |
280 |
Q |
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| T |
1891287 |
ttattataggagacagttcactttctaggttcattgagtaactgatgtatctggtctatatgatagatcagatacatcagttactcagtgaacc |
1891380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 24985949 - 24986041
Alignment:
| Q |
191 |
ttataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaaccta |
282 |
Q |
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||||| ||||||||||| |||| || |||| ||| |||||||||||| ||||||| ||||||||| |||||||| || ||||||||||| |
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| T |
24985949 |
ttataggagacaattcatttttgaggttcattgaataactgatgtatttgatctatattatagaccatatacatcaattatccaatgaaccta |
24986041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 45650993 - 45651072
Alignment:
| Q |
187 |
cttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatca |
265 |
Q |
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||||||||||||||||||| |||||| || || | ||| ||||||||| ||||| |||| ||||||||||||||||||| |
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| T |
45650993 |
cttattataagagacaattaactttttaggtttattgaataactgatgaatctgttctataatatagaccagatacatca |
45651072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 42896156 - 42896248
Alignment:
| Q |
188 |
ttattataagagacaattcacttttcag-ttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaac |
279 |
Q |
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||||||||||| |||||||||||| || |||| ||| ||||||||||||||| |||| ||| ||||| ||||||||||| ||||||||| |
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| T |
42896156 |
ttattataagaagcaattcactttttaggttcattgaataactgatgtatctggtctataataaggaccatatacatcagttattcaatgaac |
42896248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 29290897 - 29290821
Alignment:
| Q |
202 |
aattcacttttcagttcactgagtaactgatgtatctgatctaccatatagaccagatacatcagttgctcaatgaa |
278 |
Q |
| |
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||||||||||| | |||| ||| ||||| |||||| | |||| ||||||| ||||||||||||||| |||||||| |
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| T |
29290897 |
aattcactttttaattcattgaataacttatgtatttagtctataatatagatcagatacatcagttgttcaatgaa |
29290821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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