View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0436_low_13 (Length: 274)
Name: NF0436_low_13
Description: NF0436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0436_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 245
Target Start/End: Complemental strand, 41702279 - 41702072
Alignment:
| Q |
37 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaaatcgataatgttgctggcct |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||| |
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| T |
41702279 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaa-tagatagtgttgttggcct |
41702181 |
T |
|
| Q |
137 |
aatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgtttgtgttgtctc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702180 |
aatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgtttgtgttgtctc |
41702081 |
T |
|
| Q |
237 |
tgctgctcc |
245 |
Q |
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||||||||| |
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| T |
41702080 |
tgctgctcc |
41702072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 41702304 - 41702271
Alignment:
| Q |
58 |
ctgtttgcagaagctgaatagcacaagagaatca |
91 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
41702304 |
ctgtttgcagaagctgaataacacaagagaatca |
41702271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 59 - 245
Target Start/End: Original strand, 54074693 - 54074878
Alignment:
| Q |
59 |
tgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaaatcgataatgttgctggcctaatatggaatggtatcttgtac |
158 |
Q |
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| T |
54074693 |
tgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaa-tagatagtgttgttggcctaatatggaatggtatcttgtac |
54074791 |
T |
|
| Q |
159 |
ttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgtttgtgttgtctctgctgctcc |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074792 |
ttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgtttgtgttgtctctgctgctcc |
54074878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 54074570 - 54074692
Alignment:
| Q |
37 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaaatcgataatgttgctggcct |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||| |
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| T |
54074570 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgat-aaaatagatagtgttgttggcct |
54074668 |
T |
|
| Q |
137 |
aatatggaatggtatcttgtactt |
160 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
54074669 |
aatatggaatggtatcttgtactt |
54074692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 54074545 - 54074578
Alignment:
| Q |
58 |
ctgtttgcagaagctgaatagcacaagagaatca |
91 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |
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| T |
54074545 |
ctgtttgcagaagctgaataacacaagagaatca |
54074578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 23559926 - 23559806
Alignment:
| Q |
125 |
tgttgctggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23559926 |
tgttgctggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgttgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgt |
23559827 |
T |
|
| Q |
225 |
ttgtgttgtctctgctgctcc |
245 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23559826 |
ttgtgttgtctctgctgctcc |
23559806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 21134923 - 21134968
Alignment:
| Q |
37 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcaca |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21134923 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcaca |
21134968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 21134898 - 21134931
Alignment:
| Q |
58 |
ctgtttgcagaagctgaatagcacaagagaatca |
91 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
21134898 |
ctgtttgcagaagctgaatagcacaagagaatca |
21134931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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