View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0436_low_18 (Length: 235)
Name: NF0436_low_18
Description: NF0436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0436_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27939600 - 27939821
Alignment:
| Q |
1 |
gagagaacaaggaggagaatgaggaatcgaggctgagcgagaaacgcgatctctctacgcattgcttcagcacagtatttggtcagtttataccgaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27939600 |
gagagaacaaggaggagaatgaggaatcgaggctgagcgagaaacgcgatctctctacgcattgcttcagcacagtatttggtcagtttataccgaatca |
27939699 |
T |
|
| Q |
101 |
gagaaaaatcgaaactttgatattctccatggaaggtagcttagtgggtttttgtcaacattgaaaggggtaaaggaaaacgtgggacactttctcagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27939700 |
gagaaaaatcgaaactttgatattctccatagaaggtagcttagtgggtttttgtcaacattgaaaggggtaaaggaaaacgtgggacactttctcagtg |
27939799 |
T |
|
| Q |
201 |
gagattttttggtgatgatgtc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27939800 |
gagattttttggtgatgatgtc |
27939821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 127 times since January 2019
Visitors: 3270