View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_high_11 (Length: 352)
Name: NF0437_high_11
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 343
Target Start/End: Original strand, 40522612 - 40522927
Alignment:
| Q |
21 |
acatcatcatgagggtaatggaaaatgaaaaaccaataaaataatataccaatacatttgagttctctgaagggttgtcagatatattggaagtgttgtt |
120 |
Q |
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| T |
40522612 |
acatcatcatgagggtaatggaaaatgaaaaaccaataaaataatatactaattcatttgagttctctgaagggttgtcagatatattggaagtgttgtt |
40522711 |
T |
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| Q |
121 |
catggttttttatgggttaggagggttcaaattctatgaaaaaataatcaaaggaaggatacaaaagtatataatttggcaagaaaataaagaaagttat |
220 |
Q |
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| T |
40522712 |
catggttttttatgggttaggagggttcaaattctatgaaaaaataa--------aggatacagaagtatataatttggcaagaaaataaagaaagttat |
40522803 |
T |
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| Q |
221 |
atattagttgagtgagagtgaattgattataactttgtgggggcaaatatagacagaaggaataaaatgtcaacttggtgtgaatgcattatgtatgtct |
320 |
Q |
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| T |
40522804 |
atattaattgagtgagagtgaattgattataactttgtgggggcaaatatagacagaagcaataaaatgtcaacttggtgtgaatgcattatgtatgtct |
40522903 |
T |
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| Q |
321 |
gatgcttttgga-gcaacagctag |
343 |
Q |
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| T |
40522904 |
gttgcttttggaggcaacagctag |
40522927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 40526569 - 40526690
Alignment:
| Q |
60 |
aataatataccaatacatttgagttctctgaagggttgtcagatatattggaagtgttgttcatggttttttatgggttaggagggttcaaattctatga |
159 |
Q |
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| T |
40526569 |
aataatatgctaatgcatttgagttctctgaaggattttcagaattaatggaagtgttgttcatggttttctatatgttgggagagttcaatttcaataa |
40526668 |
T |
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| Q |
160 |
aaaaataatcaaaggaaggata |
181 |
Q |
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|||| |||||| | ||||||| |
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| T |
40526669 |
taaaagaatcaaggaaaggata |
40526690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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