View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0437_high_14 (Length: 324)

Name: NF0437_high_14
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0437_high_14
NF0437_high_14
[»] chr2 (13 HSPs)
chr2 (29-316)||(39372467-39372754)
chr2 (39-278)||(39224994-39225230)
chr2 (39-269)||(39385895-39386123)
chr2 (48-225)||(39204006-39204183)
chr2 (39-220)||(39179987-39180168)
chr2 (56-225)||(39163442-39163611)
chr2 (46-217)||(39217740-39217911)
chr2 (57-187)||(39395889-39396019)
chr2 (39-128)||(39379258-39379347)
chr2 (60-136)||(39492767-39492843)
chr2 (59-119)||(2363817-2363877)
chr2 (60-136)||(39131561-39131637)
chr2 (60-92)||(44894806-44894838)
[»] chr5 (1 HSPs)
chr5 (56-269)||(33563675-33563886)
[»] chr6 (1 HSPs)
chr6 (57-121)||(16115546-16115610)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 29 - 316
Target Start/End: Original strand, 39372467 - 39372754
Alignment:
Q  29 ataaataaccaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372467 ataaataaccaataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggat 39372566  T
Q  129 cacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaacagac 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372567 cacaacctgcaatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaacagac 39372666  T
Q  229 taatatgtatagaaatggggtaatgcaaacctgctaacttagtacactaccattgtaccaagttatttggagtacatggctctctgtt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39372667 taatatgtatagaaatggggtaatgcaaacctgctaacttagtacaccaccattgtaccaagttatttggagtacatggctctctgtt 39372754  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 278
Target Start/End: Original strand, 39224994 - 39225230
Alignment:
Q  39 aataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatca-caacctg 137  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| || ||| || |||     
T  39224994 aataaattgttactgtgtacttgaactcaggataaggccagagatcaagaaattgctagtctggggactgttctgcaatgcatttcgg-tcagcagccta 39225092  T
Q  138 caatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaacagactaatatgta 237  Q
     ||||||| | ||||||| ||||||||||  | ||||||||||||||||| |||||||||||||||  ||||||||||  ||| ||||  |||  |||||    
T  39225093 gaatctgcgggtctgcttcataaggagatcgactatcgcattcttgagctcaaagcacataaaggctgttagtttttgggctgaaacaagcta--atgta 39225190  T
Q  238 tagaaatggggtaatgcaaacctgctaacttagtacactac 278  Q
     | ||||||||||||| ||||||||||||||| ||||||||    
T  39225191 aacaaatggggtaatggaaacctgctaactta-tacactac 39225230  T

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Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 269
Target Start/End: Complemental strand, 39386123 - 39385895
Alignment:
Q  39 aataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgc 138  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || ||||||| |||| |||| ||      
T  39386123 aataaattgttactatgtacttgaactcaggataaggccagagatcaagaaattgctagtctggggactgttctacaatgcatttcggattacaaactag 39386024  T
Q  139 aatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaacagactaatatgtat 238  Q
    ||  ||  |||||||||  | | |||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||||  |||| ||| | ||| |     
T  39386023 aagttgaggatctgcttctttatgagattgaatatcgcattcttgagctaaaagcacataaaggcaaatagtttttgtactaaaaca-actta-atgcaa 39385926  T
Q  239 agaaatggggtaatgcaaacctgctaactta 269  Q
    ||||||||||||||| |||| ||||||||||    
T  39385925 agaaatggggtaatggaaacgtgctaactta 39385895  T

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Target: chr2; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 48 - 225
Target Start/End: Complemental strand, 39204183 - 39204006
Alignment:
Q  48 ttactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgcaatctgcag 147  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||  | ||||||||||| |||||||  |||  ||||||  ||||| | |    
T  39204183 ttactatgtacttgaactcaggataaggccagagatgaagaaattgctagtcttgggactgttctgcaatgcatttctgatagcaaccttgaatctacgg 39204084  T
Q  148 atctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaaca 225  Q
     ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||    
T  39204083 gtctgcttcataaggagattgaatatcgcattcttgagctaaaagcacataaaggctattagttattggactggaaca 39204006  T

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Target: chr2; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 39179987 - 39180168
Alignment:
Q  39 aataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgc 138  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| || |||||||  ||  |||||||      
T  39179987 aataaattgttactgtatacttgaactcaggataaggccagagatcaagaaattgctagtcttgggactgttctacaatgcatttcagacaacaaccttg 39180086  T
Q  139 aatctgcagatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactg 220  Q
    ||||| | | ||  ||| ||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  39180087 aatctacgggtcaacttcataaggagattgactatcgcattcttgagctaaaagcacataaaggcaattagtttttggactg 39180168  T

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Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 39163442 - 39163611
Alignment:
Q  56 tacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgcaatctgcagatctgctt 155  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  | ||||||||||| |||||||  ||   ||||||  ||||| | | |||||||    
T  39163442 tacttgaactcaggataaggccagagatgaagaaattgctagtcttgggactgttctgcaatgcatttctgacagcaaccttgaatctacgggtctgctt 39163541  T
Q  156 gataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaaca 225  Q
     ||  ||| ||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  39163542 catgcggatattgaatatcgcattcttgagctaaaagcacataaaggctattagtttttggactggaaca 39163611  T

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Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 39217740 - 39217911
Alignment:
Q  46 tattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgcaatctgc 145  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||| | || | |||| ||||| ||| |||| |||   ||||||  ||||||     
T  39217740 tattactatgtacttgaactcaggataaggctagagatcaagaaattgctaatttggggactgctctgctgtgtatttcggaatgcaacctagaatctga 39217839  T
Q  146 agatctgcttgataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgta 217  Q
     | |||||||   ||||| ||| | ||||||||||||||||| |||| |||||||||| ||||| |||||||    
T  39217840 ggttctgcttataaaggaaattgactatcgcattcttgagctaaaaggacataaaggcaattaggttttgta 39217911  T

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Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 187
Target Start/End: Complemental strand, 39396019 - 39395889
Alignment:
Q  57 acttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgcaatctgcagatctgcttg 156  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||  ||  |||  ||  |||| |  |||||||||     
T  39396019 acttgaactcaggataaggccagagatcaagaaattgcttgtctgggaactgttctacaatgcatttcagagaacagtctagaatcagaggatctgcttc 39395920  T
Q  157 ataaggagattcaatatcgcattcttgagct 187  Q
      ||||||||||||||||| |||||||||||    
T  39395919 gcaaggagattcaatatcgtattcttgagct 39395889  T

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Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 39379347 - 39379258
Alignment:
Q  39 aataaattattactatatacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggat 128  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||  ||||||||  || ||||||| ||||    
T  39379347 aataaattattactatgtacttgaactcaggataaggctagagatcaagaaattgctagtttggaaactgttcaacaatgcatttcggat 39379258  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 39492843 - 39492767
Alignment:
Q  60 tgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacct 136  Q
    ||||||||||| |||||||||||||||||| |||||||||| | | ||||||| ||||||||| | ||| |||||||    
T  39492843 tgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattatagataacaacct 39492767  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 2363817 - 2363877
Alignment:
Q  59 ttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgc 119  Q
    ||||| |||||||||||| | ||| |||||||||||||||||| |||||||||| ||||||    
T  2363817 ttgaaatcaggataaggcaaaagaccaagaaattgctagtctgggaactgttctacagtgc 2363877  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 39131561 - 39131637
Alignment:
Q  60 tgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacct 136  Q
    ||||||||||| |||||||||||||||||| ||||| |||| | | ||||||| || |||||| | ||| |||||||    
T  39131561 tgaactcaggacaaggccagagatcaagaagttgcttgtctcatagctgttctacaatgcattatagataacaacct 39131637  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 44894838 - 44894806
Alignment:
Q  60 tgaactcaggataaggccagagatcaagaaatt 92  Q
    |||| ||||||||||||||||||||||||||||    
T  44894838 tgaattcaggataaggccagagatcaagaaatt 44894806  T

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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 269
Target Start/End: Original strand, 33563675 - 33563886
Alignment:
Q  56 tacttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcattttggatcacaacctgcaatctgcagatctgctt 155  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  | |||||| | || |||||||  ||  |||  ||  ||||||| |||||||||    
T  33563675 tacttgaattcaggataaggccagagatcaagaaattgctagtctcgggactgttttacaatgcatttcagagaacagactagaatctgcggatctgctt 33563774  T
Q  156 gataaggagattcaatatcgcattcttgagcttaaagcacataaaggccattagtttttgtactggaacagactaatatgtatagaaatggggtaatgca 255  Q
     ||||||||||| |  |||||||||||| ||| ||| ||||||||||| ||||||||||| | |||||||  |||  ||||| ||||||||||||||  |    
T  33563775 cataaggagattgaccatcgcattcttgtgctaaaatcacataaaggcaattagtttttggagtggaacaaccta--atgtaaagaaatggggtaatcga 33563872  T
Q  256 aacctgctaactta 269  Q
    ||| ||||||||||    
T  33563873 aacgtgctaactta 33563886  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 16115546 - 16115610
Alignment:
Q  57 acttgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcat 121  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| || |||||    
T  16115546 acttgaactcaggataaggctagagatcaagaaatcgctagtctgggaactgttctacaatgcat 16115610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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