View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0437_high_19 (Length: 252)
Name: NF0437_high_19
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_high_19 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 53 - 252
Target Start/End: Complemental strand, 52512657 - 52512458
Alignment:
| Q |
53 |
ctctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgt |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52512657 |
ctctattcttcatatctcaatggattgcaatttgcaggcgtctgttattcctcgatgccttcctccaacttccatcaaacaaacaggaaggacgcgttgt |
52512558 |
T |
|
| Q |
153 |
tttattgttagatccactcttcctcaaaatcaaggctatcattcttcctccaaggtatgtatgtatgtttatatacgagtttcaattcaatttcaattac |
252 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52512557 |
tttattgttaaatccactcttcctcaaaatcaaggatatcattcttcctccaaggtatgtatgtatgtttatatatgagtttcaattcaatttcaattac |
52512458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 30 times since January 2019
Visitors: 3251