View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_high_21 (Length: 251)
Name: NF0437_high_21
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_high_21 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 34665332 - 34665554
Alignment:
| Q |
29 |
atgattaccaagaccgtcgtccttaaaaatattaacagaaacaagagcagcttttgcctgcataataaaatcttcgattgtatctggtctgtcagataag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34665332 |
atgattaccaagaccgtcgtccttaaaaatattaacagaaacaagagcagcttttgcctgcataataaaatctttgattgtatctggtctgtcagataag |
34665431 |
T |
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| Q |
129 |
catcctggaggtacaacaggaagaggatcctacataattacattatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaag |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665432 |
catcctggaggtacaacaggaagaggatcctacataattacattatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaag |
34665531 |
T |
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| Q |
229 |
atttgttattttaaacgaaaatt |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
34665532 |
atttgttattttaaacgaaaatt |
34665554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 26959102 - 26959324
Alignment:
| Q |
29 |
atgattaccaagaccgtcgtccttaaaaatattaacagaaacaagagcagcttttgcctgcataataaaatcttcgattgtatctggtctgtcagataag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26959102 |
atgattaccaagaccgtcgtccttaaaaatattaacagaaacaagagcagcttttgcctgcataataaaatcttagattgtatctggtctgtcagataag |
26959201 |
T |
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| Q |
129 |
catcctggaggtacaacaggaagaggatcctacataattacattatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaag |
228 |
Q |
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| T |
26959202 |
catcctggaggtacaacaggaagaggatcctacataattacattatcagttgatagattggacttgttcatttcttattaaacatatagccaatatgaag |
26959301 |
T |
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| Q |
229 |
atttgttattttaaacgaaaatt |
251 |
Q |
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|||| |||||||||| ||||||| |
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| T |
26959302 |
atttattattttaaaagaaaatt |
26959324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 26844618 - 26844842
Alignment:
| Q |
32 |
attaccaagaccgtcgtccttaaaaatattaacagaaacaagagcagcttttgcctgcataataaaatcttcgattgtatctggtctgtcagataagcat |
131 |
Q |
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||||||||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26844618 |
attaccaaggccgtcgtccttaaaaattccaacggaaagaagagcagcttttgcctgcataataaaatctttgattgtatctggtctgtcagataagcat |
26844717 |
T |
|
| Q |
132 |
cctggaggtacaacaggaagaggatcctaca----taattac-attatcagttgatagattggacttgttcatttcttattaaacatatagccaatatga |
226 |
Q |
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|||||||||||||||||||| ||||||| || ||||||| |||||||| ||| |||||||| ||||||||||||||||||| ||| | ||||||| |
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| T |
26844718 |
cctggaggtacaacaggaaggggatcctgcacaattaattacttttatcagtagatggattggacctgttcatttcttattaaacttattgtcaatatgc |
26844817 |
T |
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| Q |
227 |
agatttgttattttaaacgaaaatt |
251 |
Q |
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| |||||||||| | ||| |||||| |
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| T |
26844818 |
acatttgttattatcaacaaaaatt |
26844842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 18459390 - 18459488
Alignment:
| Q |
62 |
aacagaaacaagagcagcttttgcctgcataataaaatcttcgattgtatctggtctgtcagataagcatcctggaggtacaacaggaagaggatccta |
160 |
Q |
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|||||| |||||||||||||||||||| || || ||||||| | |||||||||||||||||| | ||||| |||||||||||||| |||| |||||| |
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| T |
18459390 |
aacagatacaagagcagcttttgcctgaatgatgaaatcttgaacagtatctggtctgtcagatgaacatcccggaggtacaacaggtagagaatccta |
18459488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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