View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_high_8 (Length: 448)
Name: NF0437_high_8
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 29 - 419
Target Start/End: Original strand, 6176870 - 6177260
Alignment:
| Q |
29 |
acaaggtgcataacatttttagaccttagtttaaagggtgtgannnnnnnnnnnnnnnaattagaattagtattcttaatgtagtggattgtttccatgt |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
6176870 |
acaaggtgcataacatttttagaccttagtttaaagggtgtgattttttattttttttaattagaattattattcttaacgtagtggattgtttccatgt |
6176969 |
T |
|
| Q |
129 |
gtgtgacagactgataaagcttcaatgctagatgaagctattgaataccttaaacagcttcagctccaagtacaggtttgtatctcttttatttactgca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6176970 |
gtgtgacagactgataaagcttcaatgctagatgaagctattgaataccttaaacagcttcagctccaagtacaggtttgtatctcttttatttactgca |
6177069 |
T |
|
| Q |
229 |
ctttaggtcccacccttacactaatttttactttttacaacacaaccaccctattctcagctcatcatcaatattcaatactgaatatttatgaagcatt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6177070 |
ctttaggtcccacccttacactaatttttactttttacaacacaaccaccctattctcagcccatcatcaatattcaatactgaatatttatgaagcatt |
6177169 |
T |
|
| Q |
329 |
gacacatacgccagtgtcttacaaggcaccgaaactaatttgagaagatgtgagtaattgattctaaatacttctctcggcggcttacatt |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6177170 |
gacacatacgccagtgtcttacaaggcaccgaaactaatttgagaagatgtgagtaattgattctaaatacttctctcggcggcttacatt |
6177260 |
T |
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