View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_1 (Length: 663)
Name: NF0437_low_1
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 95 - 663
Target Start/End: Original strand, 26752062 - 26752630
Alignment:
| Q |
95 |
actattaggcccacaaattccatgaataaaacaaggttgttgacgaaattgacccgaaacaaaccaaccctgttcctcatcttttctactataaatgcga |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752062 |
actattaggcccacaaattccatgaataaaacaaggttgttgacgaaattgacccgaaacaaaccaaccctgttcctcatcttttctactataaatgcga |
26752161 |
T |
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| Q |
195 |
acgttaccatcatgatcaagtgtaagtctacgttgcaaaaaagttccataatcagcagtattaaaaacaaaatcatcagatgaactaaaactaccaaatg |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
26752162 |
acgttaccatcatgatcaagtgtaagtctacgttgcaaaaaagttccataatcagcagtattaaaaacaaaatcatcagaagaactaaaactaccaaacg |
26752261 |
T |
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| Q |
295 |
aatccaacgacgcgattctactactattgtaagtacttctggtaccactaccagctgcaccattgcttgtagtccaaggatctggccaataaatgctaga |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752262 |
aatccaacgacgcgattctactactattgtaagtacttcttgtaccactaccagctgcaccattgcttgtagtccaaggatctggccaataaatgctaga |
26752361 |
T |
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| Q |
395 |
tactctcggtccttgatataaaagacgaagaatgttatcgttgtcaaaaaatagtttgtagaagccagacgaatagttcgtctgacttcttgatgaaccg |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26752362 |
tactctcggtccttgatataaaagacgaagaatgttatcattgtcaaaaaatagtttgtagaagccagacgaatagttcgtctgacttcttgatgaaacg |
26752461 |
T |
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| Q |
495 |
aggttcgtgaacctcgttaaggtttggtcggggaaaagtgtatctgttgggaggtcaaaactttgccatagaatattgttttttcttgagccatttctgc |
594 |
Q |
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||||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26752462 |
aggttcgtgaacctcgttagggtttggtcaggtaaaagtgtatctgttgggaagtcaaaactttgccatagaatattgttttttcttgaaccatttctgc |
26752561 |
T |
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| Q |
595 |
tttgttcttgaagaacaaggttacctgtttcctgttattctagttcatgcggttttgttgaggtggttt |
663 |
Q |
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||||||||||||||||||||||||||||||| ||| || ||||||| | ||||||||||||||||||| |
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| T |
26752562 |
tttgttcttgaagaacaaggttacctgtttcatgtaatagtagttcaagtggttttgttgaggtggttt |
26752630 |
T |
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