View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0437_low_12 (Length: 366)

Name: NF0437_low_12
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0437_low_12
NF0437_low_12
[»] chr7 (3 HSPs)
chr7 (158-346)||(24760273-24760461)
chr7 (44-164)||(24759770-24759890)
chr7 (167-215)||(35346415-35346463)
[»] chr3 (2 HSPs)
chr3 (158-346)||(52127708-52127896)
chr3 (44-164)||(52127205-52127325)
[»] chr5 (2 HSPs)
chr5 (156-346)||(40163704-40163899)
chr5 (165-215)||(39344961-39345011)
[»] chr1 (2 HSPs)
chr1 (57-164)||(27843397-27843504)
chr1 (167-215)||(4010808-4010856)
[»] chr2 (1 HSPs)
chr2 (193-312)||(17468019-17468140)
[»] chr6 (1 HSPs)
chr6 (165-215)||(2273474-2273524)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 24760273 - 24760461
Alignment:
Q  158 cgtctacgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccccctttttaattatgtgatttaagaac 257  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24760273 cgtctatgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccccctttttaattacgtgatttaagaac 24760372  T
Q  258 attatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24760373 attatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt 24760461  T

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Target: chr7; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 24759770 - 24759890
Alignment:
Q  44 catggccttgcaactacggtggtatcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccgtcgtc 143  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24759770 catggccttgcagctacggtggtctcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccgtcgtc 24759869  T
Q  144 gattcccccgccaccgtctac 164  Q
    || ||||||||||||||||||    
T  24759870 gactcccccgccaccgtctac 24759890  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 35346415 - 35346463
Alignment:
Q  167 gggttacgaatatagtgttcattaagttctcaaaggatttacatgtaag 215  Q
    ||||| ||||| | ||||||||||  |||||||||||||||||||||||    
T  35346415 gggttgcgaatgttgtgttcattattttctcaaaggatttacatgtaag 35346463  T

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Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 158 - 346
Target Start/End: Original strand, 52127708 - 52127896
Alignment:
Q  158 cgtctacgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccccctttttaattatgtgatttaagaac 257  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  52127708 cgtctatgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaaccccctttttaattacgtgatttaagaac 52127807  T
Q  258 attatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127808 attatttgaatttgaatatgacgtctctgattagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt 52127896  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 52127205 - 52127325
Alignment:
Q  44 catggccttgcaactacggtggtatcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccgtcgtc 143  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52127205 catggccttgcagctacggtggtctcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccgtcgtc 52127304  T
Q  144 gattcccccgccaccgtctac 164  Q
    || ||||||||||||||||||    
T  52127305 gactcccccgccaccgtctac 52127325  T

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Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 156 - 346
Target Start/End: Original strand, 40163704 - 40163899
Alignment:
Q  156 accgtctacgtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaagaaattgtttttaacc-ccctttttaattatgtgatttaag 254  Q
    |||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  40163704 accgtctttgtgggttacgaatatagtgttcattgagttctcaaaggatttacatgtaagaaattgtgtttgacctccccttttaattatgtgatttaag 40163803  T
Q  255 aacattatttgaatttgaatatgacgtctctg----attagagaatgaagatgctactatatatatttgatcgtaaatccacatctatgatgatgt 346  Q
    |||||| |||||||||||||||||||||| ||    ||| | | ||||| |||||||||||||||||||||| ||||||||||||| |||||||||    
T  40163804 aacattgtttgaatttgaatatgacgtctatgatatattgggggatgaaaatgctactatatatatttgatcctaaatccacatctttgatgatgt 40163899  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 39344961 - 39345011
Alignment:
Q  165 gtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaag 215  Q
    ||||||| ||||| | ||||||||||  |||||||||||||||||||||||    
T  39344961 gtgggttgcgaatgttgtgttcattattttctcaaaggatttacatgtaag 39345011  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 27843504 - 27843397
Alignment:
Q  57 ctacggtggtatcccaacactctgtcgcttttcttttccactctctccctcatctctctcggttccggcacaacccttgccgtcgtcgattcccccgcca 156  Q
    |||||||||  |||||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||| |||||| |||    
T  27843504 ctacggtggcctcccaacactctgttgcttttcttttccactccctccctcacctctctcagttccggcacaacccttgccgtcgccgactccccctcca 27843405  T
Q  157 ccgtctac 164  Q
    ||||||||    
T  27843404 ccgtctac 27843397  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 4010808 - 4010856
Alignment:
Q  167 gggttacgaatatagtgttcattaagttctcaaaggatttacatgtaag 215  Q
    ||||| ||||| | ||||||||||  |||||||||||||||||||||||    
T  4010808 gggttgcgaatgttgtgttcattattttctcaaaggatttacatgtaag 4010856  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 17468019 - 17468140
Alignment:
Q  193 ttctcaaaggatttacatgtaagaaattgtttttaacccccttt-ttaattatgtgatttaag-aacattatttgaatttgaatatgacgtctctgatta 290  Q
    ||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||| | ||| || ||||||||||  |||| ||| ||  ||||    
T  17468019 ttctcaaaggatttacatgtaaggagttgtttttaaccccttttcttaattatgtgatttaggaaactttgtttgaatttgtttatggcgtatccaatta 17468118  T
Q  291 gagaatgaagatgctactatat 312  Q
    | || | |||||||||||||||    
T  17468119 gggatttaagatgctactatat 17468140  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 2273474 - 2273524
Alignment:
Q  165 gtgggttacgaatatagtgttcattaagttctcaaaggatttacatgtaag 215  Q
    ||||||| ||||| | ||||||||||  |||||||||||||||||||||||    
T  2273474 gtgggttgcgaatgttgtgttcattattttctcaaaggatttacatgtaag 2273524  T

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