View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_14 (Length: 349)
Name: NF0437_low_14
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 22 - 299
Target Start/End: Original strand, 34867685 - 34867962
Alignment:
| Q |
22 |
attctatcctcgattcagttttacacagaattccccaaaatcattttagatacaggactcagatttggtttcaaatttgccaaatccaaacctgattctt |
121 |
Q |
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| T |
34867685 |
attctatcctcgattcagttttacgcagaattccccaaaatcattttagatacaggacttagatttggtttcaaatttgccaaatccaaacttgattctt |
34867784 |
T |
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| Q |
122 |
gtcttattaaccttgacaaaccataacaccactctctacacataaatgctatgtagcaccgacacgtatttgtgtccaacactgacacatgtgattatat |
221 |
Q |
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| T |
34867785 |
gtcttatcaaccttgacaaaccataacaccactctctacacataaatgctatgtagcaccgacacgtatttgtgtccaacactgacacatgtgattatat |
34867884 |
T |
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| Q |
222 |
tgaatgatttcattttcccaaaccattcttcgtgtcgacgtgtccgtgtctatatcatgtctagtgtccgtttctgtg |
299 |
Q |
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| T |
34867885 |
tgaatgatttcattttcccaaaccattcttggtgtcgacgtgtccgtgtctatatcatgtctagtgtccgtttctgtg |
34867962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 9024178 - 9024248
Alignment:
| Q |
200 |
acactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgtccgtgt |
270 |
Q |
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| T |
9024178 |
acactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt |
9024248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 42874588 - 42874536
Alignment:
| Q |
191 |
ttgtgtccaacactgacacatgtgattatattgaatgatttcattttcccaaa |
243 |
Q |
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| T |
42874588 |
ttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaa |
42874536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 23287351 - 23287415
Alignment:
| Q |
200 |
acactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgt |
264 |
Q |
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|||||||||||| | |||||||||||| || ||||||||| ||| ||| || |||||||||||| |
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| T |
23287351 |
acactgacacatataattatattgaattatgtcattttcctaaattattattggtgtcgacgtgt |
23287415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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