View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_15 (Length: 339)
Name: NF0437_low_15
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 67 - 316
Target Start/End: Original strand, 29111748 - 29111997
Alignment:
| Q |
67 |
tatacactccactagctacatgccaacaatatattcatacactccttatgatttcaccttagtttcaatccatttatcaggaaaaagctgcacactgcac |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29111748 |
tatacactccactagctacatgccaacaatatattcatacactccttatgatttcaccttagtttcaatccatttatcaggaaaaagctgcacactgcac |
29111847 |
T |
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| Q |
167 |
cacaaagaatgcagataattgctcaaaaagttaaatagctttttaatatgccttaaaataattagcatgaacaaacatagtgtatataattagcttcatt |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29111848 |
cacaaagaatgcagataattgctcaaaaagttaaatagctttttaatgtgccttaaaataattagcatgaacaaacatagtgtatataattagcttcatt |
29111947 |
T |
|
| Q |
267 |
gatcacatatttattttttatatagaaagtggtaactaactcattcagct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29111948 |
gatcacatatttattttttatatagaaagtggtaactaactcattcagct |
29111997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 68 - 316
Target Start/End: Complemental strand, 33314004 - 33313756
Alignment:
| Q |
68 |
atacactccactagctacatgccaacaatatattcatacactccttatgatttcaccttagtttcaatccatttatcaggaaaaagctgcacactgcacc |
167 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33314004 |
atacactccactagctacatgccaacaatatattcatacactccttatgatttcaccttagtttcaatccatttatcaggaaaaagctgcacactgcacc |
33313905 |
T |
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| Q |
168 |
acaaagaatgcagataattgctcaaaaagttaaatagctttttaatatgccttaaaataattagcatgaacaaacatagtgtatataattagcttcattg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||| || |
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| T |
33313904 |
acaaagaatgcagataattgctcaaaaagttaaatagctttttaatgtgccttaaaataatccgaatgaacaaacatagtgtatataatcagcttcaatg |
33313805 |
T |
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| Q |
268 |
atcacatatttattttttatatagaaagtggtaactaactcattcagct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33313804 |
atcacatatttattttttatatagaaagtggtaactaactcattcagct |
33313756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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