View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_18 (Length: 317)
Name: NF0437_low_18
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 56 - 317
Target Start/End: Original strand, 32725353 - 32725614
Alignment:
| Q |
56 |
agcagagagcaaacgtcttgatttccaatccaacaccaacttattactacccacacccacctcttcaaccctatacccatcattaaaaagccctaacaac |
155 |
Q |
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| T |
32725353 |
agcagaaagcaaacgtcttgatttccaatccaacaccaacttattactacccacacccacctcttcaaccctatacccatcattaaaaagccctaacaac |
32725452 |
T |
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| Q |
156 |
agcttcgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacctaaccactccccccatgaccttctctcctcttcaccacccg |
255 |
Q |
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| T |
32725453 |
agctttgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacctaaccactccccccatgaccttctctcctcttcaccacccg |
32725552 |
T |
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| Q |
256 |
ttctatatatccggcccaacgagcctgcaattctaggcccaaaaaataccctctccaccaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725553 |
ttctatatatccggcccaacgagcctgcaattctaggcccaaaaaataccctctccaccaaa |
32725614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 24256370 - 24256537
Alignment:
| Q |
56 |
agcagagagcaaacgtcttgatttccaatccaacaccaacttattactacccacacccacctcttcaaccctatacccatcattaaaaagccctaacaac |
155 |
Q |
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|||||| ||||||||||||||||||||| | |||||||||||||| | ||||| |||||| |||||||||||||| ||||| | || || ||| |
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| T |
24256370 |
agcagaaagcaaacgtcttgatttccaacctaacaccaacttattgtt------acccaactcttccaccctatacccatcgttaaataaacccaataac |
24256463 |
T |
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| Q |
156 |
agcttcgcttgacaatgatttgcaaagctcaccggaactcccctaaaccctacctcacctaaccactcccccca |
229 |
Q |
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| T |
24256464 |
aactttgcttgacaatggttaccatagcttatgttaactcctctgaacccttccacacccaaccactcccccca |
24256537 |
T |
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