View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0437_low_19 (Length: 313)

Name: NF0437_low_19
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0437_low_19
NF0437_low_19
[»] chr3 (1 HSPs)
chr3 (92-313)||(49201496-49201717)
[»] scaffold0102 (1 HSPs)
scaffold0102 (167-205)||(14371-14410)
[»] chr8 (1 HSPs)
chr8 (167-205)||(35049084-35049123)
[»] chr5 (5 HSPs)
chr5 (167-205)||(5708173-5708212)
chr5 (167-205)||(8933893-8933932)
chr5 (167-205)||(9821439-9821478)
chr5 (167-205)||(14196578-14196617)
chr5 (173-202)||(19967118-19967147)
[»] chr2 (2 HSPs)
chr2 (167-205)||(5375600-5375639)
chr2 (176-205)||(43323771-43323800)
[»] chr1 (1 HSPs)
chr1 (167-205)||(25275142-25275181)
[»] chr7 (1 HSPs)
chr7 (176-205)||(18264571-18264600)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 49201496 - 49201717
Alignment:
Q  92 gttatttcatgaattatgcatgctatcaataaaataaccacaatgtgatgtaatcatatggatctcatggatcatattaacaaattttttgtttgatgga 191  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49201496 gttatttcatgaattatgcatgctatcaatataataaccacaatgtgatgtaatcatatggatctcatggatcatattaacaaattttttgtttgatgga 49201595  T
Q  192 tggattggatggatcatatcattgatgttagtccctgtcaagagttttgttttaaacaccaaaagtgcattcnnnnnnntaccatgcatgtaaaaatgta 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  49201596 tggattggatggatcatatcattgatgttagtccctgtcaagagttttgttttaaacaccaaaagtgcattcaaaaaaataccatgcatgtaaaaatgta 49201695  T
Q  292 aattaaattgtcatataacata 313  Q
    ||||||||||||||||||||||    
T  49201696 aattaaattgtcatataacata 49201717  T

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Target: scaffold0102 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 14371 - 14410
Alignment:
Q  167 attaacaaatttt-ttgtttgatggatggattggatggat 205  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  14371 attaacaaatttttttgtttgatggatggattggatggat 14410  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 35049084 - 35049123
Alignment:
Q  167 attaacaaatttt-ttgtttgatggatggattggatggat 205  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  35049084 attaacaaatttttttgtttgatggatggattggatggat 35049123  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 5708212 - 5708173
Alignment:
Q  167 attaacaaatttttt-gtttgatggatggattggatggat 205  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5708212 attaacaaatttttttgtttgatggatggattggatggat 5708173  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 8933893 - 8933932
Alignment:
Q  167 attaacaaatttt-ttgtttgatggatggattggatggat 205  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  8933893 attaacaaatttttttgtttgatggatggattggatggat 8933932  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 9821478 - 9821439
Alignment:
Q  167 attaacaaatt-ttttgtttgatggatggattggatggat 205  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  9821478 attaacaaattattttgtttgatggatggattggatggat 9821439  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 14196617 - 14196578
Alignment:
Q  167 attaacaaat-tttttgtttgatggatggattggatggat 205  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  14196617 attaacaaatatttttgtttgatggatggattggatggat 14196578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Original strand, 19967118 - 19967147
Alignment:
Q  173 aaattttttgtttgatggatggattggatg 202  Q
    ||||||||||||||||||||||||||||||    
T  19967118 aaattttttgtttgatggatggattggatg 19967147  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 5375639 - 5375600
Alignment:
Q  167 attaacaaatttttt-gtttgatggatggattggatggat 205  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5375639 attaacaaatttttttgtttgatggatggattggatggat 5375600  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 43323800 - 43323771
Alignment:
Q  176 ttttttgtttgatggatggattggatggat 205  Q
    ||||||||||||||||||||||||||||||    
T  43323800 ttttttgtttgatggatggattggatggat 43323771  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 25275181 - 25275142
Alignment:
Q  167 attaacaaatttttt-gtttgatggatggattggatggat 205  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  25275181 attaacaaatttttttgtttgatggatggattggatggat 25275142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 18264571 - 18264600
Alignment:
Q  176 ttttttgtttgatggatggattggatggat 205  Q
    ||||||||||||||||||||||||||||||    
T  18264571 ttttttgtttgatggatggattggatggat 18264600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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