View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_27 (Length: 276)
Name: NF0437_low_27
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 8631396 - 8631504
Alignment:
| Q |
1 |
ataaacgcgaattgagaaccgtagggttggtatggaaattcgacgggaagacctccgatgtggtatacatttttagggttaggttttttctcggcggagg |
100 |
Q |
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| T |
8631396 |
ataaacgcgaattgagaaccgtagggttggtatggaaattcgacgggaagacctccgatgtggtatacatttttagggttaggttttttctcggcggagg |
8631495 |
T |
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| Q |
101 |
aagaggaat |
109 |
Q |
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| T |
8631496 |
aagaggaat |
8631504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 55776354 - 55776417
Alignment:
| Q |
213 |
caaaaacacacatagagtaaaatccactctgtatatcttcttatctctatgcaacgattttctt |
276 |
Q |
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| T |
55776354 |
caaaaacacaaaaagagtaaaagtcacactgtatttcttcttatctctatgcaacgtttttctt |
55776417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 55840532 - 55840595
Alignment:
| Q |
213 |
caaaaacacacatagagtaaaatccactctgtatatcttcttatctctatgcaacgattttctt |
276 |
Q |
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| T |
55840532 |
caaaaacacaaaaagagtaaaagtcacactgtatttcttcttatctctatgcaacgtttttctt |
55840595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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