View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_29 (Length: 272)
Name: NF0437_low_29
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 56 - 247
Target Start/End: Complemental strand, 293225 - 293030
Alignment:
| Q |
56 |
tcaagaacatattaataatgtcatgtattataattcctactgnnnnnnn----gtgttctggaagtgccatgtaccttatgatgcttgaaattgaggctt |
151 |
Q |
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| T |
293225 |
tcaagaacatgttaataatgtcatgtattataattcctactgtttttttttttgtgttctggaagtgctaggtaccttatgatgcttaaaattgaggctt |
293126 |
T |
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| Q |
152 |
ttatgcaaaaatacgttttctgcagaattctagattgtcacaagtcgccgggtgagctagaactcgccatggcgagttgggaatctgtgctctctg |
247 |
Q |
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| T |
293125 |
ttatgcaaaaatacgttttctgcagaattctagactgtcacaagtcgccgggtgagctagaactcgccatggcgagttgggaatctgtgctctctg |
293030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 37985464 - 37985330
Alignment:
| Q |
105 |
gtgttctggaagtgccatgtaccttatgatgcttgaaattgaggctttt---atgcaaaaatacgttttctgcagaattctagattgtcacaagtcgccg |
201 |
Q |
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| T |
37985464 |
gtgttctggaagtatcaggtaccttatgatgcttgaaattgaggttttttttatgcaaaaatacgttttctgcagaattctggactgtcacaactcgtcg |
37985365 |
T |
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| Q |
202 |
ggtgagctagaactcgccatggcgagttgggaatc |
236 |
Q |
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| T |
37985364 |
ggcgagctagaactcgccatggcgagttgggaatc |
37985330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 25239533 - 25239484
Alignment:
| Q |
168 |
tttctgcagaattctagattgtcacaagtcgccgggtgagctagaactcg |
217 |
Q |
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| T |
25239533 |
tttctgcagaattctggactgtcacaactcgccgggcgagctagaactcg |
25239484 |
T |
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