View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0437_low_30 (Length: 265)

Name: NF0437_low_30
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0437_low_30
NF0437_low_30
[»] chr2 (10 HSPs)
chr2 (112-249)||(6915185-6915322)
chr2 (182-238)||(10492777-10492833)
chr2 (187-239)||(28105350-28105402)
chr2 (182-245)||(10463585-10463648)
chr2 (198-245)||(10507349-10507396)
chr2 (182-233)||(10860707-10860758)
chr2 (182-244)||(10474161-10474223)
chr2 (182-238)||(7476566-7476622)
chr2 (182-233)||(10848803-10848854)
chr2 (182-239)||(7478731-7478788)
[»] chr5 (1 HSPs)
chr5 (24-113)||(42010329-42010418)
[»] chr3 (1 HSPs)
chr3 (24-113)||(1245667-1245756)
[»] chr7 (1 HSPs)
chr7 (178-249)||(15045570-15045641)
[»] chr8 (1 HSPs)
chr8 (183-234)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 6915185 - 6915322
Alignment:
Q  112 aggtagatgatgtacttgctgaagcgtttcttagcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggctaccatagcacggaa 211  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915185 aggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggctaccatagcacggaa 6915284  T
Q  212 atttataccggtattcatgggtagtgctgtcaaaaaca 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6915285 atttataccggtattcatgggtagtgctgtcaaaaaca 6915322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q  182 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 238  Q
    ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||||||    
T  10492833 agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc 10492777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q  187 ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 239  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  28105350 ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct 28105402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q  182 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 245  Q
    |||||||||||| || || ||||||||||||||||||||  | ||||||||||||||| |||||    
T  10463648 agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa 10463585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q  198 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 245  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  10507396 accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q  182 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 233  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  10860758 agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt 10860707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q  182 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa 244  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||    
T  10474223 agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q  182 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 238  Q
    |||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||    
T  7476566 agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc 7476622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q  182 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 233  Q
    |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  10848854 agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt 10848803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q  182 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 239  Q
    |||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  7478731 agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct 7478788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 42010418 - 42010329
Alignment:
Q  24 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacag 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42010418 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacag 42010329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 1245756 - 1245667
Alignment:
Q  24 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacag 113  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||    
T  1245756 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacag 1245667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q  178 agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 249  Q
    ||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||    
T  15045641 agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q  183 gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta 234  Q
    |||||||||||||| |||||||||||||||||| ||||  | ||||||||||    
T  44307073 gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta 44307022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 268 times since January 2019
Visitors: 3262