View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0437_low_34 (Length: 255)
Name: NF0437_low_34
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_34 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 30360971 - 30360827
Alignment:
| Q |
1 |
atgcgtattttcttccaaagaaattttaacaaccaggacnnnnnnnncttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaattt |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30360971 |
atgcgtattttcttcaaaagaaatttaaacaaccaggacttttttttcatttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaattt |
30360872 |
T |
|
| Q |
101 |
cttttcatctgaatgtaccttgcagggacccaatcccagttccag |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30360871 |
cttttcatctgaatgtaccttgcagggacccaatcccagttccag |
30360827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 19916321 - 19916226
Alignment:
| Q |
50 |
tttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggacccaatcccagttccag |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19916321 |
tttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatatgaatgtaccttgcagggacccaatcccagttccag |
19916226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 42010321 - 42010418
Alignment:
| Q |
152 |
agcagaacctgtggctcgagtattggctgaaacaccaatgtcgtcatcatcatcgtcttcatcacgtttatctcctcagctttacaagattcaaaagc |
249 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42010321 |
agcagaaactgtggctcgagtattggctgaaacaccaatgccgtcatcatcatcgtcttcatcacgtttatctcctcggctttacaagattcaaaagc |
42010418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 1245659 - 1245756
Alignment:
| Q |
152 |
agcagaacctgtggctcgagtattggctgaaacaccaatgtcgtcatcatcatcgtcttcatcacgtttatctcctcagctttacaagattcaaaagc |
249 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1245659 |
agcagaaactgtggctcgagtattggctgaaacaccaatgccgtcatctttatcgtcttcatcacgtttatctcctcggctttacaagattcaaaagc |
1245756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 35 times since January 2019
Visitors: 3242