View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_35 (Length: 254)
Name: NF0437_low_35
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 36 - 237
Target Start/End: Original strand, 52470300 - 52470501
Alignment:
| Q |
36 |
ttgagatcaaggtgtgatttgatcctctctatatatatatttagccctagaaagccgtcggggtttgtcattcttcatcttattcactcggttttctcct |
135 |
Q |
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| T |
52470300 |
ttgagatcaaggtgtcatttgatcctctctatatatatatttagccctagaaagccgt-ggggtttgtcattcttcatcttattcactcggttttctcct |
52470398 |
T |
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| Q |
136 |
ttggtttt-cactggtcgtcaacatcgctgtcaaaaccattcttctagcgcaaggtaatataatttatactgtttattgtgtatttatactctagtgtgc |
234 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52470399 |
ttggtttttcactggtcgtcaacatcgctgtcaaaatcattcttctagcgcaaggtaatataatttatactgtttattgtgtatttatactctagtgtgc |
52470498 |
T |
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| Q |
235 |
ttc |
237 |
Q |
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||| |
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| T |
52470499 |
ttc |
52470501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 52471156 - 52471330
Alignment:
| Q |
65 |
tatatatatatttagccctagaaagccgtcggggtttg-tcattcttcatcttat----tcactcggttttctcctttggttttcactggtcgtcaacat |
159 |
Q |
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| T |
52471156 |
tatatatatatattgccctagaaagccgtcagggtttcattatt-ttcatcttatacgttcattcg-ttttctcctctggttttaactagtc---aaaat |
52471250 |
T |
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| Q |
160 |
cgctgtcaaaaccattcttctagcgcaaggtaatataatttatactgtttattgtgtatttatactctagtgtgcttcat |
239 |
Q |
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|| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
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| T |
52471251 |
cgttgtcaaaaccattctttcaacgcaaggtaatataatttatactgtttattgtgtatttaaactctactctgcttcat |
52471330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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