View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0437_low_39 (Length: 249)
Name: NF0437_low_39
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 19962396 - 19962499
Alignment:
| Q |
52 |
tcttcatcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgt |
151 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
19962396 |
tcttcatcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttgtctctactgcaaccgt |
19962494 |
T |
|
| Q |
152 |
ctctg |
156 |
Q |
| |
|
||||| |
|
|
| T |
19962495 |
ctctg |
19962499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 1971415 - 1971487
Alignment:
| Q |
84 |
accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg |
156 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1971415 |
accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg |
1971487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 1971363 - 1971400
Alignment:
| Q |
52 |
tcttcatcttcctttcctcaacttcctcccctaccccc |
89 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
1971363 |
tcttcatcttcctttcctcaccttcttcccctaccccc |
1971400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1542 times since January 2019
Visitors: 3232