View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_40 (Length: 244)
Name: NF0437_low_40
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_40 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 3762512 - 3762630
Alignment:
| Q |
126 |
cactgtcaccaacaacaggcatctccctaaccttcttaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagc |
225 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
3762512 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc |
3762611 |
T |
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| Q |
226 |
aaaattcattgtcacaaga |
244 |
Q |
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|||||||| ||||| |||| |
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| T |
3762612 |
aaaattcactgtcataaga |
3762630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 3776599 - 3776711
Alignment:
| Q |
132 |
caccaacaacaggcatctccctaaccttcttaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaatt |
231 |
Q |
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|||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||| |
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| T |
3776599 |
caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagcaaaatt |
3776698 |
T |
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| Q |
232 |
cattgtcacaaga |
244 |
Q |
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|||||||| |||| |
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| T |
3776699 |
cattgtcataaga |
3776711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 3745722 - 3745824
Alignment:
| Q |
132 |
caccaacaacaggcatctccctaaccttcttaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaatt |
231 |
Q |
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||||||||| |||||| ||||||||||| |||||||| | ||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| | |
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| T |
3745722 |
caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaaagt |
3745821 |
T |
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| Q |
232 |
cat |
234 |
Q |
| |
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||| |
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| T |
3745822 |
cat |
3745824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 3780912 - 3781024
Alignment:
| Q |
132 |
caccaacaacaggcatctccctaaccttcttaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaatt |
231 |
Q |
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|||||||||||||||||||||||||| |||| || ||||||||||| | ||||||| |||||| |||||||||||||||||||| ||||||||||| |
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| T |
3780912 |
caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagcaaaatt |
3781011 |
T |
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| Q |
232 |
cattgtcacaaga |
244 |
Q |
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|||||||| |||| |
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| T |
3781012 |
cattgtcataaga |
3781024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 3751539 - 3751641
Alignment:
| Q |
132 |
caccaacaacaggcatctccctaaccttcttaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaatt |
231 |
Q |
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|||||| || ||||||||| ||| |||| |||| | | | ||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||| || |
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| T |
3751539 |
caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaagtt |
3751638 |
T |
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| Q |
232 |
cat |
234 |
Q |
| |
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||| |
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| T |
3751639 |
cat |
3751641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 3755446 - 3755508
Alignment:
| Q |
172 |
attcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaattcat |
234 |
Q |
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|||||| ||||| |||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
3755446 |
attccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcat |
3755508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 3766974 - 3767036
Alignment:
| Q |
172 |
attcctccccaagatagtactagtacttccattatactttccttcaatcaaagcaaaattcat |
234 |
Q |
| |
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|||||| ||||| |||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
3766974 |
attccttcccaatatagtaagtgtacttccattatactttccttcagtaaaagcaaaattcat |
3767036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 3789125 - 3789162
Alignment:
| Q |
197 |
cttccattatactttccttcaatcaaagcaaaattcat |
234 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||| |
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| T |
3789125 |
cttccattatactttccttcaaacaaagcaaagttcat |
3789162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
| Q |
24 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
121 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
42010418 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
42010321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
| Q |
24 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
121 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
1245756 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
1245659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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