View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_41 (Length: 236)
Name: NF0437_low_41
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
| Q |
24 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
121 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
42010418 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
42010321 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
| Q |
24 |
gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagccacaggttctgct |
121 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
1245756 |
gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct |
1245659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 3762512 - 3762619
Alignment:
| Q |
126 |
cactgtcaccaacaacaggcatctccctaaccttattaagagctggattcctccataagatagtaatagtacctcaatcatactttccttcaatcaaagc |
225 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||||||||||||||| ||||| |
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| T |
3762512 |
cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaagc |
3762611 |
T |
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| Q |
226 |
aaatttca |
233 |
Q |
| |
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||| |||| |
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| T |
3762612 |
aaaattca |
3762619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 3776599 - 3776703
Alignment:
| Q |
132 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccataagatagtaatagtacctcaatcatactttccttcaatcaaagcaaattt |
231 |
Q |
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|||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||| |||| | || ||||||||||||||| |||||||| || |
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| T |
3776599 |
caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaagcaaaatt |
3776698 |
T |
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| Q |
232 |
cattg |
236 |
Q |
| |
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||||| |
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|
| T |
3776699 |
cattg |
3776703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 3745722 - 3745818
Alignment:
| Q |
132 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccataagatagtaatagtacctcaatcatactttccttcaatcaaagcaaa |
228 |
Q |
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||||||||| |||||| |||||||||||||||||||| | ||| |||| |||||||||||||||| | || ||||||||||||||| |||||||| |
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| T |
3745722 |
caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaagcaaa |
3745818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 3780912 - 3781016
Alignment:
| Q |
132 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccataagatagtaatagtacctcaatcatactttccttcaatcaaagcaaattt |
231 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||||| || |||||||| ||||| | || ||||||||||||||| |||||||| || |
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| T |
3780912 |
caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaagcaaaatt |
3781011 |
T |
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| Q |
232 |
cattg |
236 |
Q |
| |
|
||||| |
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| T |
3781012 |
cattg |
3781016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 3751539 - 3751641
Alignment:
| Q |
132 |
caccaacaacaggcatctccctaaccttattaagagctggattcctccataagatagtaatagtacctcaatcatactttccttcaatcaaagcaaattt |
231 |
Q |
| |
|
|||||| || ||||||||| ||| ||||||||| | | | |||||||| ||||||||||| |||| | || ||||||||||||||| |||||||| || |
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| T |
3751539 |
caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaagcaaagtt |
3751638 |
T |
|
| Q |
232 |
cat |
234 |
Q |
| |
|
||| |
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|
| T |
3751639 |
cat |
3751641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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