View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0437_low_43 (Length: 228)

Name: NF0437_low_43
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0437_low_43
NF0437_low_43
[»] chr8 (1 HSPs)
chr8 (30-134)||(19962396-19962499)
[»] chr7 (2 HSPs)
chr7 (62-134)||(1971415-1971487)
chr7 (30-67)||(1971363-1971400)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 19962396 - 19962499
Alignment:
30 tcttcatcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgt 129  Q
    |||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||  ||||||||||    
19962396 tcttcatcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttgtctctactgcaaccgt 19962494  T
130 ctctg 134  Q
    |||||    
19962495 ctctg 19962499  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 1971415 - 1971487
Alignment:
62 accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg 134  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1971415 accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg 1971487  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 1971363 - 1971400
Alignment:
30 tcttcatcttcctttcctcaacttcctcccctaccccc 67  Q
    |||||||||||||||||||| |||| ||||||||||||    
1971363 tcttcatcttcctttcctcaccttcttcccctaccccc 1971400  T

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