View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0437_low_45 (Length: 224)

Name: NF0437_low_45
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0437_low_45
NF0437_low_45
[»] chr4 (7 HSPs)
chr4 (126-224)||(3762512-3762610)
chr4 (132-224)||(3745722-3745814)
chr4 (132-224)||(3776599-3776691)
chr4 (132-224)||(3780912-3781004)
chr4 (132-224)||(3751539-3751631)
chr4 (140-217)||(3755414-3755491)
chr4 (140-217)||(3766942-3767019)
[»] chr5 (1 HSPs)
chr5 (24-121)||(42010321-42010418)
[»] chr3 (1 HSPs)
chr3 (24-121)||(1245659-1245756)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 3762512 - 3762610
Alignment:
Q  126 cactgtcaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaag 3762610  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 3745722 - 3745814
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag 224  Q
    ||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||    
T  3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaag 3745814  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 3776599 - 3776691
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag 224  Q
    |||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||| | ||||| |||||||||||||||||||| ||||    
T  3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaag 3776691  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 3780912 - 3781004
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag 224  Q
    ||||||||||||||||||||||||||  |||||  || ||||||||||| | |||||||  |||||| |||||||||||||||||||| ||||    
T  3780912 caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaag 3781004  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 132 - 224
Target Start/End: Original strand, 3751539 - 3751631
Alignment:
Q  132 caccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttcaatcaaag 224  Q
    |||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||| | ||||| |||||||||||||||||||| ||||    
T  3751539 caccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatactttccttcaatgaaag 3751631  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 3755414 - 3755491
Alignment:
Q  140 acaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttca 217  Q
    ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||   ||||||||||||||||||||||||    
T  3755414 acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttca 3755491  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 3766942 - 3767019
Alignment:
Q  140 acaggcatctccctaaccttattaagagctggattcctccccaagatagtactagtacttccattatactttccttca 217  Q
    ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||   ||||||||||||||||||||||||    
T  3766942 acaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgtacttccattatactttccttca 3767019  T

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Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 42010418 - 42010321
Alignment:
Q  24 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagacacaggttctgct 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  42010418 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgatgatgatgacggcattggtgtttcagccaatactcgagccacagtttctgct 42010321  T

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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 1245756 - 1245659
Alignment:
Q  24 gcttttgaatcttgtaaagctgaggagataaacgtgatgaagacgatgatgatgacgacattggtgtttcagccaatactcgagacacaggttctgct 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  1245756 gcttttgaatcttgtaaagccgaggagataaacgtgatgaagacgataaagatgacggcattggtgtttcagccaatactcgagccacagtttctgct 1245659  T

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