View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_46 (Length: 219)
Name: NF0437_low_46
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 47193559 - 47193419
Alignment:
| Q |
1 |
cagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193559 |
cagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgttt |
47193460 |
T |
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| Q |
101 |
cccttcaacacaatatccccacatatcaattaaattcatat |
141 |
Q |
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| T |
47193459 |
cccttcaacacaatatccccacatatcaattaaattcatat |
47193419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 9792651 - 9792524
Alignment:
| Q |
9 |
ttaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaa |
108 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||| |||| ||||||||||| |
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| T |
9792651 |
ttaaatctcttattccaatcaactgaattagaacatagattctcaactaatgaaccatgttccatatactcataaaccaaaagtctatttttcccttcaa |
9792552 |
T |
|
| Q |
109 |
cacaatatccccacatatcaattaaatt |
136 |
Q |
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| T |
9792551 |
cacaatatccccacatatcaattaaatt |
9792524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 6609365 - 6609487
Alignment:
| Q |
4 |
ctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttccc |
103 |
Q |
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| T |
6609365 |
ctacattaaatctcttattccaatcaagtgaattagaacatagattctcaactaatgaaccatgttccatatactcataaaccagaagcctatgtttccc |
6609464 |
T |
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| Q |
104 |
ttcaacacaatatccccacatat |
126 |
Q |
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| T |
6609465 |
ctcaacacaatatccccacatat |
6609487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 6624756 - 6624634
Alignment:
| Q |
4 |
ctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttccc |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||| ||||||||||||||| |
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| T |
6624756 |
ctacattaaatctcttattccaatcaagtgaattagaacatagattctcaactaatgaaccatgttccgtatactcataaaccagaagcctatgtttccc |
6624657 |
T |
|
| Q |
104 |
ttcaacacaatatccccacatat |
126 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
6624656 |
ctcaacacaatatccccacatat |
6624634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 21130572 - 21130666
Alignment:
| Q |
45 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcat |
139 |
Q |
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| T |
21130572 |
agattttccgctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcat |
21130666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 18658734 - 18658828
Alignment:
| Q |
45 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcat |
139 |
Q |
| |
|
||||| || |||||||| |||| ||| || |||||||| |||||||| ||||| || |||||| |||||||||||||||||||||| || ||||| |
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| T |
18658734 |
agattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcat |
18658828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 21111612 - 21111691
Alignment:
| Q |
45 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacat |
124 |
Q |
| |
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||||| || |||||||| |||| ||| || |||||||| |||||||| ||||| || |||||| |||||||||||||||| |
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| T |
21111612 |
agattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacat |
21111691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 39132134 - 39132070
Alignment:
| Q |
75 |
tactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcat |
139 |
Q |
| |
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|||||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||| |
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| T |
39132134 |
tactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaattaagttcat |
39132070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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