View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_5 (Length: 489)
Name: NF0437_low_5
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 29 - 478
Target Start/End: Original strand, 7002617 - 7003065
Alignment:
| Q |
29 |
aagatgcacaatggttattgcgcaacattttctcttgtgttttacatatttaaatactttgtattgagtaaaccatcaaaatggtccttaattttgtaag |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
7002617 |
aagatgcacaatggttattgcgcaacattttctcttgtgttttacatatttaaatactttgtatcgagtaaaccatcaaaatgatccttaattttgtaag |
7002716 |
T |
|
| Q |
129 |
atcctcttaatttagtctttgacatatgaacataaaaatgtattttagtctctacacgttaaagaccgacatctatcagttactcgcaaacctaaattaa |
228 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7002717 |
atcctcttaatttagtctttggcatatgaacataaaaatgtattttagtctctacacgttaaagaccgacatctatcagttactcgcaaacctaaattaa |
7002816 |
T |
|
| Q |
229 |
tcaagttttattagatcactttgtaattgagcttagtacataatacatgttgtattaatgacccaaaaatgttctcctagacttaatgtacaaatatatc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7002817 |
tcaagttttattagatcactttgtaattgagcttagtacataatacatgttggattaatgacccaaaaatgttctcctagacttaatgtacaaatatatc |
7002916 |
T |
|
| Q |
329 |
acttctggccaaaatgaactctgtcttgtaattatcctttttatgcctgccagagttatatccatcttacaatctacagatttgattccatcgccaaaac |
428 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7002917 |
acttctggccaaaatgaactctgtcttgtaattatcc-ttttatgcctgccagagttatatccatcttacaatctacagatttgattccatcgccaaaac |
7003015 |
T |
|
| Q |
429 |
aaaaccagcctcatcattgcttcatctttcattcggtgactttgttctct |
478 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7003016 |
aaaaccagcctcatcattgcttcatctttcattcggtgactttgttctct |
7003065 |
T |
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