View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0437_low_6 (Length: 485)

Name: NF0437_low_6
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0437_low_6
NF0437_low_6
[»] chr4 (16 HSPs)
chr4 (1-419)||(836564-836976)
chr4 (103-167)||(11383232-11383296)
chr4 (136-172)||(7700644-7700680)
chr4 (136-168)||(670487-670519)
chr4 (136-172)||(9280285-9280321)
chr4 (136-172)||(18780642-18780678)
chr4 (136-172)||(24319419-24319455)
chr4 (136-172)||(24574867-24574903)
chr4 (136-172)||(56078788-56078824)
chr4 (137-172)||(42430364-42430399)
chr4 (130-168)||(15726569-15726607)
chr4 (136-169)||(19615035-19615068)
chr4 (139-172)||(23695618-23695651)
chr4 (130-171)||(35747636-35747677)
chr4 (136-172)||(31567847-31567883)
chr4 (136-172)||(42414257-42414293)
[»] chr2 (6 HSPs)
chr2 (78-189)||(32631556-32631666)
chr2 (78-173)||(17199832-17199926)
chr2 (136-172)||(16672373-16672409)
chr2 (137-172)||(22596714-22596749)
chr2 (136-172)||(21352009-21352045)
chr2 (140-172)||(29772572-29772604)
[»] chr1 (11 HSPs)
chr1 (119-172)||(40211253-40211306)
chr1 (136-172)||(5559745-5559781)
chr1 (136-172)||(14462062-14462098)
chr1 (140-172)||(28655942-28655974)
chr1 (130-171)||(7005054-7005095)
chr1 (136-172)||(24063609-24063645)
chr1 (140-172)||(31088614-31088646)
chr1 (136-172)||(33111394-33111430)
chr1 (136-172)||(33719292-33719328)
chr1 (136-172)||(35671807-35671843)
chr1 (136-172)||(41198207-41198243)
[»] chr3 (11 HSPs)
chr3 (136-172)||(19636255-19636291)
chr3 (136-172)||(48082593-48082629)
chr3 (130-171)||(32033752-32033793)
chr3 (136-172)||(1030841-1030877)
chr3 (104-174)||(31938503-31938573)
chr3 (351-393)||(38379420-38379462)
chr3 (130-171)||(34711583-34711624)
chr3 (136-168)||(29283341-29283373)
chr3 (136-172)||(37282357-37282393)
chr3 (136-172)||(39716954-39716990)
chr3 (136-172)||(48973449-48973485)
[»] chr5 (9 HSPs)
chr5 (130-171)||(20209746-20209787)
chr5 (130-166)||(1274173-1274209)
chr5 (136-172)||(40987700-40987736)
chr5 (130-165)||(16038229-16038264)
chr5 (136-172)||(1495577-1495613)
chr5 (105-157)||(7016181-7016233)
chr5 (136-172)||(7946480-7946516)
chr5 (136-172)||(13555130-13555166)
chr5 (136-172)||(17342167-17342203)
[»] chr8 (9 HSPs)
chr8 (136-172)||(1265466-1265502)
chr8 (136-172)||(6345657-6345693)
chr8 (136-172)||(10182920-10182956)
chr8 (136-172)||(26720867-26720903)
chr8 (136-172)||(31126970-31127006)
chr8 (136-172)||(37948654-37948690)
chr8 (136-172)||(43619749-43619785)
chr8 (136-172)||(13471225-13471261)
chr8 (139-171)||(42199795-42199827)
[»] chr7 (8 HSPs)
chr7 (136-172)||(1576204-1576240)
chr7 (136-172)||(8080884-8080920)
chr7 (136-172)||(27392945-27392981)
chr7 (92-175)||(30816551-30816634)
chr7 (130-159)||(2116021-2116050)
chr7 (139-172)||(40305818-40305851)
chr7 (104-175)||(19221209-19221281)
chr7 (136-172)||(36482362-36482398)
[»] chr6 (6 HSPs)
chr6 (136-172)||(7607992-7608028)
chr6 (136-172)||(16705074-16705110)
chr6 (136-166)||(3900840-3900870)
chr6 (136-168)||(4463885-4463917)
chr6 (136-172)||(29174965-29175001)
chr6 (136-172)||(30395925-30395961)
[»] scaffold0396 (1 HSPs)
scaffold0396 (136-172)||(975-1011)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 836976 - 836564
Alignment:
Q  1 ccttaatttctttaatcaactcaaccaagtgagctactcatcccctgtataggcattagagagataatatttcaacttgattttatcgtgactttatagt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  836976 ccttaatttctttaatcaactaaaccaagtgagctactcatcctctgtataggcattagaga--taatatttcaacttgattttatcgtgactttatagt 836879  T
Q  101 agtaattttaatagattttttcacaaaactgtaaattggatatccaaaaatcgatccaaattaaaccgcataaaagtagactggatcaannnnnnnaatc 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||       |||     
T  836878 agtaattttaatagattttttcacaaaattgtaaattggatatcgaaaaatcgattcaaattaaaccgcataaaagtagactggatcaatttttttaatg 836779  T
Q  201 ataatccaaatttacctgcgagagtatttaaatttttggatttgatgatatttttgtccttataactgatcaccatgaacaactctactctgttcattaa 300  Q
    |||||||||||    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  836778 ataatccaaat----ctgcgagagtatttaaatttttggatttaatgatatttttgtccttataactgatcaccatgaacacctctactctgttcattaa 836683  T
Q  301 gcaattccttgttaggggctaatatagcaactttattnnnnnnnnntctaataaacaatatttgtttattcaaattggtaaagtacattgatataacaca 400  Q
    |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  836682 gcaattccttgttaggggctaatatagcaactttatt-aaaaaaaatctaataaacaatatttgtttattcaaattggtaaagtacattgatataacaca 836584  T
Q  401 cgct-acattgttgatgatg 419  Q
    |||| ||||||| |||||||    
T  836583 cgctcacattgtcgatgatg 836564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 11383232 - 11383296
Alignment:
Q  103 taattttaatagattttttcacaaaactgtaaattggatatccaaaaatcgatccaaattaaacc 167  Q
    |||||||||||||||||||||||||| | ||| || ||||||||||||| |||||||| ||||||    
T  11383232 taattttaatagattttttcacaaaattataattttgatatccaaaaattgatccaaactaaacc 11383296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 7700644 - 7700680
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||||||||||||||||||||||||||||||||    
T  7700644 ttggatatccaaaaatcgatccaaattaaaccgcata 7700680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 670519 - 670487
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccg 168  Q
    |||||||||||||||||||||||||||||||||    
T  670519 ttggatatccaaaaatcgatccaaattaaaccg 670487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 9280285 - 9280321
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  9280285 ttggatatccaaaaaccgatccaaattaaaccgcata 9280321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 18780678 - 18780642
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||||||||||| ||||||||||||||||||||    
T  18780678 ttggatatccaaaaattgatccaaattaaaccgcata 18780642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 24319419 - 24319455
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  24319419 ttggatatccaaaaaccgatccaaattaaaccgcata 24319455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 24574903 - 24574867
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  24574903 ttggatatccaaaaaccgatccaaattaaaccgcata 24574867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 56078788 - 56078824
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||| ||||||||||||||||||||||||||||||    
T  56078788 ttggatgtccaaaaatcgatccaaattaaaccgcata 56078824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 42430364 - 42430399
Alignment:
Q  137 tggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||| ||||||||||||||||||||||||||||||    
T  42430364 tggatgtccaaaaatcgatccaaattaaaccgcata 42430399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 15726607 - 15726569
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaaattaaaccg 168  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  15726607 tgtaatttggatatccaaaaaccgatccaaattaaaccg 15726569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 19615035 - 19615068
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgc 169  Q
    ||||||| ||||||||||||||||||||||||||    
T  19615035 ttggataaccaaaaatcgatccaaattaaaccgc 19615068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 23695651 - 23695618
Alignment:
Q  139 gatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||||||| |||||||||||||||||||||    
T  23695651 gatatccaaaaaccgatccaaattaaaccgcata 23695618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 35747636 - 35747677
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaaattaaaccgcat 171  Q
    ||||| || |||||||||||| ||||||||||||||||||||    
T  35747636 tgtaattttgatatccaaaaaccgatccaaattaaaccgcat 35747677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 31567883 - 31567847
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  31567883 ttggatatccaaaaaccgatccaaataaaaccgcata 31567847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 42414293 - 42414257
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  42414293 ttggacatccaaaaaccgatccaaattaaaccgcata 42414257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 32631556 - 32631666
Alignment:
Q  78 tgattttatcgtgactttatagtagtaattttaatagattttttcacaaaactgtaaattggatatccaaaaatcgatccaaattaaaccgcataaaagt 177  Q
    ||||||||||||| ||| ||| || |||||||||||||||||| ||||||| ||||| |||||| ||||||||   |||||||||||||||||||||| |    
T  32631556 tgattttatcgtgtctt-ataatattaattttaatagatttttccacaaaattgtaatttggatgtccaaaaacatatccaaattaaaccgcataaaatt 32631654  T
Q  178 agactggatcaa 189  Q
    ||| || |||||    
T  32631655 agattgtatcaa 32631666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 17199926 - 17199832
Alignment:
Q  78 tgattttatcgtgactttatagtagtaattttaatagattttttcacaaaactgtaaattggatatccaaaaatcgatccaaattaaaccgcataa 173  Q
    ||||||| ||||| ||||||| || ||||||||||| |||||| ||||||||||||| ||| |||||||||| || ||||||| |||| |||||||    
T  17199926 tgattttttcgtgtctttataataataattttaatatattttt-cacaaaactgtaatttgtatatccaaaagtcaatccaaactaaaacgcataa 17199832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 16672373 - 16672409
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16672373 ttggatatccaaaaaccgatccaaattaaaccgcata 16672409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 22596714 - 22596749
Alignment:
Q  137 tggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||| ||||||||||||||||||||||||||||||    
T  22596714 tggatgtccaaaaatcgatccaaattaaaccgcata 22596749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 21352045 - 21352009
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  21352045 ttggacatccaaaaaccgatccaaattaaaccgcata 21352009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 29772572 - 29772604
Alignment:
Q  140 atatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||| |||||||||||||||||||||    
T  29772572 atatccaaaaaccgatccaaattaaaccgcata 29772604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 40211306 - 40211253
Alignment:
Q  119 tttcacaaaactgtaaattggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  40211306 tttcataaaattgtaatttggatatccaaaaatcgatccaaactaaaccgcata 40211253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 5559745 - 5559781
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5559745 ttggatatccaaaaatcgatccaaattaaaccacata 5559781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 14462062 - 14462098
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14462062 ttggatatccaaaaaccgatccaaattaaaccgcata 14462098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 28655942 - 28655974
Alignment:
Q  140 atatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||||||||||||||||||||||||||||    
T  28655942 atatccaaaaatcgatccaaattaaaccgcata 28655974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 7005054 - 7005095
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaaattaaaccgcat 171  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  7005054 tgtaatttggacatccaaaattcgatccaaattaaaccgcat 7005095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 24063645 - 24063609
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| | |||||||||||||||||||    
T  24063645 ttggatatccaaaaaccaatccaaattaaaccgcata 24063609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 31088646 - 31088614
Alignment:
Q  140 atatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||    
T  31088646 atatccaaaaatcgaaccaaattaaaccgcata 31088614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 33111394 - 33111430
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||||||||  |||||||||||||||    
T  33111394 ttggatatccaaaaatcgatttaaattaaaccgcata 33111430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 33719328 - 33719292
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||| |||||| |||||||||||||||||||||    
T  33719328 ttggatattcaaaaaccgatccaaattaaaccgcata 33719292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 35671843 - 35671807
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  35671843 ttggatatccaaaaaccgatccaaattaaactgcata 35671807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 41198243 - 41198207
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  41198243 ttggatatccaaaaaccgatccaaattaaatcgcata 41198207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 19636291 - 19636255
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||||||||||||||||||||||||||||||||    
T  19636291 ttggatatccaaaaatcgatccaaattaaaccgcata 19636255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 48082629 - 48082593
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||||||||||||||||||||||||||||||||    
T  48082629 ttggatatccaaaaatcgatccaaattaaaccgcata 48082593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 32033793 - 32033752
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaaattaaaccgcat 171  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  32033793 tgtaatttggatatccaaaaaccgatccaaattaaaccgcat 32033752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 1030841 - 1030877
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1030841 ttggacatccaaaaatcgatccaaattaaaccgcata 1030877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 31938573 - 31938503
Alignment:
Q  104 aattttaatagattttttcacaaaactgtaaattggatatccaaaaatcgatccaaattaaaccgcataaa 174  Q
    ||||||||||||| |||| | |||| ||| | ||||||||| || |||||||||||| ||||| |||||||    
T  31938573 aattttaatagatcttttgaaaaaattgttatttggatatcaaacaatcgatccaaactaaactgcataaa 31938503  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 38379420 - 38379462
Alignment:
Q  351 ataaacaatatttgtttattcaaattggtaaagtacattgata 393  Q
    |||||| |||||| ||||||||||||| |||||||||||||||    
T  38379420 ataaacgatatttatttattcaaattgataaagtacattgata 38379462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 34711624 - 34711583
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaaattaaaccgcat 171  Q
    ||||| |||||||||||||||||||||||| |||||| ||||    
T  34711624 tgtaatttggatatccaaaaatcgatccaatttaaactgcat 34711583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 29283341 - 29283373
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccg 168  Q
    ||||||||||||||| |||||||||||||||||    
T  29283341 ttggatatccaaaaaccgatccaaattaaaccg 29283373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 37282393 - 37282357
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| | |||||||||||||||||||    
T  37282393 ttggatatccaaaaaccaatccaaattaaaccgcata 37282357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 39716990 - 39716954
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||| |||||||||||||||||| |||||||||||    
T  39716990 ttggatgtccaaaaatcgatccaaaataaaccgcata 39716954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 48973485 - 48973449
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  48973485 ttggatatcaaaaaaccgatccaaattaaaccgcata 48973449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 20209787 - 20209746
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaaattaaaccgcat 171  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  20209787 tgtaatttggatatccaaaaattgatccaaattaaaccgcat 20209746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 1274209 - 1274173
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaaattaaac 166  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1274209 tgtaatttggatatccaaaaatcgatccaaattaaac 1274173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 40987700 - 40987736
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  40987700 ttggatatccaaaaaccgatccaaattaaaccgcata 40987736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 16038264 - 16038229
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaaattaaa 165  Q
    ||||| ||||||||||||||||||||||||||||||    
T  16038264 tgtaatttggatatccaaaaatcgatccaaattaaa 16038229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 1495613 - 1495577
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||| |||||||| |||||||||||||||||||||    
T  1495613 ttggatgtccaaaaaccgatccaaattaaaccgcata 1495577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 7016181 - 7016233
Alignment:
Q  105 attttaatagattttttcacaaaactgtaaattggatatccaaaaatcgatcc 157  Q
    ||||||||||||||||||||| || ||||| ||||||||  |||||| |||||    
T  7016181 attttaatagattttttcacacaattgtaatttggatattaaaaaattgatcc 7016233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 7946516 - 7946480
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||||| |||||| |||||||||||||||||||    
T  7946516 ttggatatcccaaaatcaatccaaattaaaccgcata 7946480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 13555130 - 13555166
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  13555130 ttggatatccaaaaaccgatctaaattaaaccgcata 13555166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 17342203 - 17342167
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||  |||||||||||||||||||||    
T  17342203 ttggatatccaaaatccgatccaaattaaaccgcata 17342167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 1265466 - 1265502
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  1265466 ttggatatccaaaaaccgatccaaattaaaccgcata 1265502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 6345657 - 6345693
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  6345657 ttggatatccaaaaaccgatccaaattaaaccgcata 6345693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 10182956 - 10182920
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10182956 ttggatatccaaaaaccgatccaaattaaaccgcata 10182920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 26720903 - 26720867
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  26720903 ttggatatccaaaaaccgatccaaattaaaccgcata 26720867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 31127006 - 31126970
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  31127006 ttggatatccaaaaaccgatccaaattaaaccgcata 31126970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 37948690 - 37948654
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37948690 ttggatatccaaaaaccgatccaaattaaaccgcata 37948654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 43619785 - 43619749
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  43619785 ttggatatccaaaaaccgatccaaattaaaccgcata 43619749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 13471225 - 13471261
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||| |||||| |||||||||||||||||||||    
T  13471225 ttggatattcaaaaaccgatccaaattaaaccgcata 13471261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 42199827 - 42199795
Alignment:
Q  139 gatatccaaaaatcgatccaaattaaaccgcat 171  Q
    |||||||||||| ||||||||||||||||||||    
T  42199827 gatatccaaaaaccgatccaaattaaaccgcat 42199795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 1576204 - 1576240
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  1576204 ttggatatccaaaaaccgatccaaattaaaccgcata 1576240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 8080884 - 8080920
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  8080884 ttggatatccaaaaaccgatccaaattaaaccgcata 8080920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 27392945 - 27392981
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27392945 ttggatatccaaaaaccgatccaaattaaaccgcata 27392981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 30816551 - 30816634
Alignment:
Q  92 ctttatagtagtaattttaatagattttttcacaaaactgtaaattggatatccaaaaatcgatccaaattaaaccgcataaaa 175  Q
    ||||||| || ||||||| |||||||||| ||||| ||| ||| ||||||||||||||| | || |||| |||||  |||||||    
T  30816551 ctttataatattaattttcatagatttttacacaatactataatttggatatccaaaaaccaattcaaactaaactacataaaa 30816634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 2116021 - 2116050
Alignment:
Q  130 tgtaaattggatatccaaaaatcgatccaa 159  Q
    ||||||||||||||||||||||||||||||    
T  2116021 tgtaaattggatatccaaaaatcgatccaa 2116050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 40305818 - 40305851
Alignment:
Q  139 gatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||| ||||||||||||||||||||    
T  40305818 gatatccaaaaattgatccaaattaaaccgcata 40305851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 19221281 - 19221209
Alignment:
Q  104 aattttaatagatt-ttttcacaaaactgtaaattggatatccaaaaatcgatccaaattaaaccgcataaaa 175  Q
    |||||||||||||| |||| |||||| ||||| |||||||||| |||| | ||| ||| |||||| |||||||    
T  19221281 aattttaatagattttttttacaaaattgtaatttggatatcccaaaaccaatcaaaactaaaccacataaaa 19221209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 36482398 - 36482362
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  36482398 ttggatatcaaaaaaccgatccaaattaaaccgcata 36482362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 7608028 - 7607992
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7608028 ttggatatccaaaaaccgatccaaattaaaccgcata 7607992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 16705110 - 16705074
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16705110 ttggatatccaaaaaccgatccaaattaaaccgcata 16705074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 3900870 - 3900840
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaac 166  Q
    |||||||||||||||||||||||||||||||    
T  3900870 ttggatatccaaaaatcgatccaaattaaac 3900840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 4463917 - 4463885
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccg 168  Q
    ||||||||||||||| |||||||||||||||||    
T  4463917 ttggatatccaaaaaccgatccaaattaaaccg 4463885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 29175001 - 29174965
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||||| |||||| |||||||||||||||||||||    
T  29175001 ttggatatacaaaaaccgatccaaattaaaccgcata 29174965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 30395925 - 30395961
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  30395925 ttggatatccaaaaagcgatccaaattaaatcgcata 30395961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 1011 - 975
Alignment:
Q  136 ttggatatccaaaaatcgatccaaattaaaccgcata 172  Q
    |||||| |||||||| |||||||||||||||||||||    
T  1011 ttggatgtccaaaaaccgatccaaattaaaccgcata 975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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