View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_7 (Length: 484)
Name: NF0437_low_7
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 411
Target Start/End: Original strand, 836956 - 837352
Alignment:
| Q |
5 |
agttgattaaagaaattaaggacttaaatgtctagcctagtaagataggaaatactaacataaaaattaacgtactaattttatgagcttcaggttatcc |
104 |
Q |
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| T |
836956 |
agttgattaaagaaattaaggacttaaatgtctagcctagtaagataggaaatactaacgtaaaaattaacgtactaattttacgagcttcaggttatcc |
837055 |
T |
|
| Q |
105 |
atcgtagacttctattggttaaagagatgaatcttcaagatgttatttgctatttgaactctttccactttatattctcaaggggcaaatttcttgatgc |
204 |
Q |
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| T |
837056 |
atcgcagacttctattggttaaagagatgaatcttcaagatgttatttgctatttgaactctctccactttatattctcaaggggcaaatttcttgatgc |
837155 |
T |
|
| Q |
205 |
cacgaatatgttagtctaatttaagacatcaacgatcttctcaactttgatcggaccatatcaattgttcacactctttgtgtatgcaatagttgtgcta |
304 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
837156 |
cacgaatatgttagtctaatttaagacatcaatgatcttctcaactttgatcggaccatatcaattgttcacactctttgtgtatgcaatagttgtgctg |
837255 |
T |
|
| Q |
305 |
acttcttagcaaagtttagagcttcttcatcctcagatcatgaggatctcatgatctgcttctccaccgccaaacagaccttctagcatctgattatgcg |
404 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
837256 |
ac-tcttagcaaagtttagagcttcttcatcctca---------gatctcatgatctgcttctccaccgccaaacagaccttctagcatctgattatgcg |
837345 |
T |
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