View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0437_low_8 (Length: 479)
Name: NF0437_low_8
Description: NF0437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0437_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 21 - 450
Target Start/End: Original strand, 30941819 - 30942248
Alignment:
| Q |
21 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941819 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
30941918 |
T |
|
| Q |
121 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30941919 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtat |
30942018 |
T |
|
| Q |
221 |
gttttatggacaaccagaaccacctgcaccgtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942019 |
gttttatggacaaccagaaccacctgcaccttgtacttgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttat |
30942118 |
T |
|
| Q |
321 |
gaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggta |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942119 |
gaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggta |
30942218 |
T |
|
| Q |
421 |
taccttataagaagaaaaagaaaagcacaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
30942219 |
taccttataagaagaaaaagaaaagcacaa |
30942248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 37974937 - 37974981
Alignment:
| Q |
60 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatac |
104 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||| |
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|
| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatac |
37974981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 48 - 450
Target Start/End: Original strand, 39556357 - 39556759
Alignment:
| Q |
48 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaata |
147 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| || |||||| |
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| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
|
| Q |
148 |
gcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgc |
247 |
Q |
| |
|
||||||||| ||||| || ||| | || ||||| |||||||||||||| || |||||| ||||||||||||||||||||||||| ||||| ||||| || |
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|
| T |
39556457 |
ccaaccatgtgttggaatttcttaggtatttagatcaatttggaaaaaccaaagttcatttacaaggttgtatgttttatggacagccagagccaccagc |
39556556 |
T |
|
| Q |
248 |
accgtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatact |
347 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||| | |||||||| ||||| || ||||||||||||||||| ||||| || || |||| || ||| |
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|
| T |
39556557 |
accttgtacatgtccacttagacaagcttggggaagtcttgatgctctaattgggaggttaagggctgcttatgaggaaaacggcggaactccagagact |
39556656 |
T |
|
| Q |
348 |
aatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggtataccttataagaagaaaaagaaaagca |
447 |
Q |
| |
|
|||||||| || || ||| | ||||| || || ||||| ||| |||| |||| ||||||||||||||| ||||| ||||| |||||||||||||| |||| |
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| T |
39556657 |
aatcctttcgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaagagca |
39556756 |
T |
|
| Q |
448 |
caa |
450 |
Q |
| |
|
||| |
|
|
| T |
39556757 |
caa |
39556759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 442
Target Start/End: Complemental strand, 32002397 - 32002006
Alignment:
| Q |
51 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaatagca |
150 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| | || ||||||||||| |||| ||| | || ||| | |
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|
| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatacttaaggaatcaaagaccaccagtggcactatcaaattgtaattcaa |
32002298 |
T |
|
| Q |
151 |
accatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcacc |
250 |
Q |
| |
|
|||||||| | || ||||| | ||||| || |||||||||||||| || || || ||||||||||| |||||| |||||| | |||||||||| ||| |
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|
| T |
32002297 |
accatgttcttgaattcctaaggtacttggatcaatttggaaaaacaaaagtgcacttacaaggttgtttgtttttcggacaaaccgaaccacctggacc |
32002198 |
T |
|
| Q |
251 |
gtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtgggtctcctgatactaat |
350 |
Q |
| |
|
||||| |||||||| | ||||||||||||||| | ||||| || |||||||||||||| ||||||||||||||||||||||| | ||||| |||||| |
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|
| T |
32002197 |
atgtacttgtcctctaaaacaagcttggggaagtcttgatgcactaattggaagattaagagctgcttatgaagaaaatggtggattacctgaaactaat |
32002098 |
T |
|
| Q |
351 |
ccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggtataccttataagaagaaaaagaa |
442 |
Q |
| |
|
|||||||||||||||||||| | |||| ||| | ||| | ||||| |||||||||||||||||||| || ||||| |||||||||||||| |
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| T |
32002097 |
ccttttgctagtggttccataagaatctatcttcgtgaggtgagagattctcaagctaaggctagaggaattccttacaagaagaaaaagaa |
32002006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 326
Target Start/End: Original strand, 4863129 - 4863290
Alignment:
| Q |
165 |
ttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcaccgtgtacctgtcctc |
264 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| | || ||||| || |||| |||||||| || || || ||||||||||| ||||| |
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|
| T |
4863129 |
ttccttcgttacttagatcaatttggaaagactaaggttcacttgcacggttgcatctttttcggacaacccgatccgccggcaccgtgtacttgtccgt |
4863228 |
T |
|
| Q |
265 |
ttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaa |
326 |
Q |
| |
|
| |||||||||||||| || | ||||| || || ||| | |||| ||||||||||||||| |
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|
| T |
4863229 |
tgagacaagcttgggggagtcttgatgcactcatcggacggctaagagctgcttatgaagaa |
4863290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 33672141 - 33672046
Alignment:
| Q |
240 |
ccacctgcaccgtgtacctgtcctcttagacaagcttggggaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtggg |
335 |
Q |
| |
|
||||||||||| ||| | |||||||| |||||||||||||||| | ||||| | ||||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
33672141 |
ccacctgcaccttgtccttgtcctctacgacaagcttggggaagtcttgatgcattgattggaagactaagagctgcttttgaagaaaatggtggg |
33672046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 335
Target Start/End: Original strand, 15970300 - 15970455
Alignment:
| Q |
180 |
gaccaatttggaaaaactaaggttcatgtacaaggttgtatgttttatggacaaccagaaccacctgcaccgtgtacctgtcctcttagacaagcttggg |
279 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||||| ||| | ||||||||| | ||| | ||||||||| | ||||| |||| |
|
|
| T |
15970300 |
gaccaatttggaaaaactaaggttcatactctgatttgtcccttttatggacatccaaatccacctgcatcatgtccatgtcctcttcgccaagcgtggg |
15970399 |
T |
|
| Q |
280 |
gaagcttagatgctcttattggaagattaagggctgcttatgaagaaaatggtggg |
335 |
Q |
| |
|
| || | ||||| |||||||| ||| | || ||||||| |||||| ||||||||| |
|
|
| T |
15970400 |
gtagtcttgatgcacttattgggagacttagagctgcttttgaagagaatggtggg |
15970455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 283
Target Start/End: Original strand, 35814540 - 35814703
Alignment:
| Q |
120 |
ccaccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgta |
219 |
Q |
| |
|
|||| ||||||||| ||||| || || |||||||||| | ||||| ||||||||| | || |||||||| || ||||||||||| | |||||||| | |
|
|
| T |
35814540 |
ccactagttccactatcacactgtaacttcaaccatgttcttgattttcttcgttaccttgatcaatttggtaagactaaggttcactttcaaggttgca |
35814639 |
T |
|
| Q |
220 |
tgttttatggacaaccagaaccacctgcaccgtgtacctgtcctcttagacaagcttggggaag |
283 |
Q |
| |
|
| || | ||||||||| ||||||||||| ||| | |||||||| | |||||||||||||| |
|
|
| T |
35814640 |
tcttctttggacaacctaccccacctgcaccttgtgcttgtcctctcaagcaagcttggggaag |
35814703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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