View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438-3B-Insertion-1 (Length: 398)
Name: NF0438-3B-Insertion-1
Description: NF438-3B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438-3B-Insertion-1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 235 - 398
Target Start/End: Complemental strand, 38028784 - 38028621
Alignment:
| Q |
235 |
tgctttcttacttgttttgtgtttccattaaaaactctttgatctgatccatttttagagtggagtgttaataagtctatgaacgacaacaagattgtgc |
334 |
Q |
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| T |
38028784 |
tgcttccttacttgttttgtgtttccattaaaaactctttgatctgatccatttttagagtggagtgttaataagtctatgaacgacaacaagattgtgc |
38028685 |
T |
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| Q |
335 |
agatattgaaactttttgttgtgctactcttagatagcatcaccatttttccctcaccttgatg |
398 |
Q |
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| T |
38028684 |
agatattgaaactttttgttgtgctactcttagatagcatcactatttttccctcaccttgatg |
38028621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 38028928 - 38028754
Alignment:
| Q |
8 |
agggcaatgtgtttgccaatcaattgtgatcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaagacagtggtggtatgcggtgga |
107 |
Q |
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| T |
38028928 |
agggcaatgtgtttgccaatcaattgtgatcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaagacggtggtggtatgcggtaga |
38028829 |
T |
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| Q |
108 |
atcttagtgattggctgcttgcgatggcatcgttttgagatcattggttccttagttgttttgtgtttccattaa |
182 |
Q |
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| T |
38028828 |
atcttagtgattggctgcttgcgatggcatcgttttgagatcaatgcttccttacttgttttgtgtttccattaa |
38028754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 31574617 - 31574566
Alignment:
| Q |
38 |
caaatgctttgttttgaacatggttagataaagatgagaaaaacagaagaca |
89 |
Q |
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| T |
31574617 |
caaatgctttgttttgaacatggttagataaagatgagaaaaacagaagaca |
31574566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 31574564 - 31574520
Alignment:
| Q |
106 |
gaatcttagtgattggctgcttgcgatggcatcgttttgagatca |
150 |
Q |
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| T |
31574564 |
gaatcttagtgattggctgcttgctatggcatcaatttgagatca |
31574520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 15150837 - 15150883
Alignment:
| Q |
188 |
tagttttcactttccgttatttgttattgcttaattttaatcttaat |
234 |
Q |
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| T |
15150837 |
tagttttcactttctgttatttgttattgcaatattttaatcttaat |
15150883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 6509376 - 6509332
Alignment:
| Q |
106 |
gaatcttagtgattggctgcttgcgatggcatcgttttgagatca |
150 |
Q |
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| T |
6509376 |
gaatcttagtgattggctgcttgttatggcatcaatttgagatca |
6509332 |
T |
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