View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438-3B-Insertion-3 (Length: 318)
Name: NF0438-3B-Insertion-3
Description: NF438-3B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438-3B-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 36 - 314
Target Start/End: Original strand, 19082961 - 19083240
Alignment:
| Q |
36 |
aattgttttcaatgaaaaacttctattattcannnnnnnnn-aactaata--ctccatatgcactggttagcataacccacttcaaagtttcaatctaag |
132 |
Q |
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| T |
19082961 |
aattgttttcaatgaaaaacttctattattcattttttttttaactaatatactccatatgcactagttagcataacccacttcaaagttccaatgtaag |
19083060 |
T |
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| Q |
133 |
gtcatataactcataacaaaatcaaaattataattataattttctctctctaaacaatatcaccagtcttctctttagaagtgcccaacaaccaccaccc |
232 |
Q |
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| T |
19083061 |
gtcata--actcataacaaaatcaaaattataattataattttctctctctaaacaatatcatcagtcttctctttagaagcgcctaacaaccaccgccc |
19083158 |
T |
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| Q |
233 |
tccctacctccctcatctaaatctagttctttatcaagtaaatatacctgacggtgaggcggcgaggtgttggaactcattt |
314 |
Q |
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| T |
19083159 |
tctctacctccctcatctaaatctagttctttatcaagtaaatatacctgacggtgaggcggcgaggtgttggaactcattt |
19083240 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 13299727 - 13299808
Alignment:
| Q |
238 |
acctccctcatctaaatctagttctttatcaagtaaatatacctgacggtgaggcggcgaggtgttgg-aactcattttcac |
318 |
Q |
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| T |
13299727 |
acctccctaatccaaatctatttgttcatcaagtagatctagttggcggtgaggcgacgaggtgttggaaactcattttcac |
13299808 |
T |
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