View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438-3B-Insertion-4 (Length: 290)
Name: NF0438-3B-Insertion-4
Description: NF438-3B
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438-3B-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 46 - 280
Target Start/End: Original strand, 38862176 - 38862404
Alignment:
| Q |
46 |
gaactagaagaagattttgttaacttctttagtgatgtcaacaactactcaaaatcacaaacaaatgaatcattatcatcaacggaatcaaactcttctg |
145 |
Q |
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| T |
38862176 |
gaactagaagaagattttgttaacttctttagtgatgtcaacaactactcaaactcttc------tggatcattatcatcaacggaatcaaactcttctg |
38862269 |
T |
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| Q |
146 |
gatccgtactaagcaatgaaccactagaagtttcatcaaataccacttatacacaagtgatcaaagagacacaaacatcatcaccacctccaccgccgcc |
245 |
Q |
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| T |
38862270 |
gatccgtactaagcaatgaaccactagaagtttcatcaaataccacttataaacaagtgatcaaagagacacaaacatcatcaccacctccaccgccgcc |
38862369 |
T |
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| Q |
246 |
gattaaggaaagtaagaaaagagcatccagaggag |
280 |
Q |
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| T |
38862370 |
gattaaggaaagtaagaaaagagcatttagaggag |
38862404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 19720216 - 19720142
Alignment:
| Q |
152 |
tactaagcaatgaaccactagaagtttcatcaaataccacttatacacaagtgatcaaagagacacaaacatcat |
226 |
Q |
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| T |
19720216 |
tactaagcaatggatcacttgaagtctcatctaatactacttacacacaagtgatcaaagagaaacaaacatcat |
19720142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 19840442 - 19840486
Alignment:
| Q |
184 |
aataccacttatacacaagtgatcaaagagacacaaacatcatca |
228 |
Q |
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| T |
19840442 |
aatacaacttatacacaagtgatcaaagagacacaaacatcatca |
19840486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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