View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_1D_high_11 (Length: 315)

Name: NF0438_1D_high_11
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_1D_high_11
NF0438_1D_high_11
[»] chr4 (15 HSPs)
chr4 (11-166)||(38147357-38147519)
chr4 (17-139)||(12639721-12639843)
chr4 (17-131)||(28103806-28103920)
chr4 (43-132)||(917683-917772)
chr4 (23-139)||(43012754-43012870)
chr4 (23-110)||(23643431-23643518)
chr4 (45-110)||(12639208-12639273)
chr4 (23-139)||(54714873-54714989)
chr4 (45-107)||(28104360-28104421)
chr4 (45-107)||(919115-919176)
chr4 (45-139)||(43013130-43013224)
chr4 (71-139)||(12629834-12629902)
chr4 (21-52)||(918651-918682)
chr4 (71-132)||(25163430-25163491)
chr4 (19-59)||(23037998-23038038)
[»] chr2 (9 HSPs)
chr2 (17-138)||(4329599-4329720)
chr2 (17-139)||(39865298-39865420)
chr2 (17-139)||(29770766-29770888)
chr2 (23-151)||(30674429-30674557)
chr2 (23-138)||(9074598-9074713)
chr2 (45-136)||(4330136-4330226)
chr2 (23-127)||(9914204-9914308)
chr2 (45-107)||(29771299-29771360)
chr2 (45-139)||(39864768-39864860)
[»] chr3 (10 HSPs)
chr3 (167-300)||(45395426-45395560)
chr3 (17-139)||(23566889-23567011)
chr3 (17-137)||(39737724-39737844)
chr3 (23-136)||(785770-785883)
chr3 (23-110)||(30385749-30385836)
chr3 (45-107)||(39737232-39737293)
chr3 (23-109)||(53153855-53153941)
chr3 (45-137)||(23566432-23566522)
chr3 (217-283)||(50470355-50470421)
chr3 (45-118)||(53153517-53153590)
[»] scaffold0064 (1 HSPs)
scaffold0064 (166-300)||(19917-20052)
[»] chr7 (11 HSPs)
chr7 (17-139)||(31166954-31167076)
chr7 (21-127)||(21971546-21971651)
chr7 (35-118)||(27596002-27596084)
chr7 (23-142)||(28750927-28751045)
chr7 (23-138)||(38916392-38916507)
chr7 (23-127)||(27230474-27230578)
chr7 (25-140)||(15577468-15577578)
chr7 (45-138)||(21972092-21972184)
chr7 (23-131)||(32741787-32741895)
chr7 (45-138)||(38916045-38916138)
chr7 (19-78)||(21948149-21948208)
[»] chr6 (7 HSPs)
chr6 (167-300)||(17922857-17922991)
chr6 (23-137)||(8700890-8701004)
chr6 (23-110)||(12307301-12307388)
chr6 (23-110)||(7727381-7727468)
chr6 (23-132)||(604984-605096)
chr6 (45-139)||(12306970-12307064)
chr6 (45-139)||(8701263-8701357)
[»] chr8 (7 HSPs)
chr8 (17-135)||(26759207-26759325)
chr8 (17-130)||(146644-146757)
chr8 (23-142)||(308301-308420)
chr8 (23-131)||(186682-186790)
chr8 (48-139)||(187049-187140)
chr8 (45-107)||(147190-147251)
chr8 (23-77)||(25277141-25277195)
[»] chr5 (7 HSPs)
chr5 (17-139)||(39121834-39121956)
chr5 (167-295)||(3623465-3623594)
chr5 (23-131)||(14393983-14394091)
chr5 (24-139)||(20983543-20983658)
chr5 (23-131)||(25672272-25672380)
chr5 (45-136)||(20983842-20983933)
chr5 (45-139)||(14394344-14394438)
[»] chr1 (2 HSPs)
chr1 (23-131)||(40888792-40888900)
chr1 (71-139)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 38147519 - 38147357
Alignment:
Q  11 gacatcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38147519 gacatcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattg 38147420  T
Q  111 actatttactgttccttatccagtgccc-------ctggttaacattgcccaaattattaaat 166  Q
    ||||||||||||||||||||||||||||       | ||||| ||||||||||||||||||||    
T  38147419 actatttactgttccttatccagtgcccgaaagcaccggttagcattgcccaaattattaaat 38147357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 12639721 - 12639843
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  12639721 aaagagtattgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctatt 12639820  T
Q  117 tactgttccttatccagtgcccc 139  Q
    || ||||||||||||||| ||||    
T  12639821 tattgttccttatccagtacccc 12639843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 28103920 - 28103806
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||    
T  28103920 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatt 28103821  T
Q  117 tactgttccttatcc 131  Q
    || ||||||||||||    
T  28103820 tattgttccttatcc 28103806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 917772 - 917683
Alignment:
Q  43 atttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||| ||||| |||||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcca 917683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 43012870 - 43012754
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  || ||||||| |||||||||||| ||||||| |||    
T  43012870 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattgt 43012771  T
Q  123 tccttatccagtgcccc 139  Q
    |||||||||||||||||    
T  43012770 tccttatccagtgcccc 43012754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 23643518 - 23643431
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 110  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||||||||||||||||||||||    
T  23643518 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttatttattg 23643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 12639273 - 12639208
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 110  Q
    ||||||||||||||||||| |||||| ||||||||| | |||||||||||||| ||||||||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttatttattg 12639208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 54714873 - 54714989
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||| | ||||||| ||||||||| || | |||| ||||||||||||| |||| ||| |||||| ||| |||||||||||| ||||||  | |    
T  54714873 tattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttatttattgcctattttttat 54714972  T
Q  123 tccttatccagtgcccc 139  Q
    || ||||||| ||||||    
T  54714973 tctttatccaatgcccc 54714989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 28104360 - 28104421
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 107  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttattta 28104421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 919115 - 919176
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 107  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||  |||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttattta 919176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 43013130 - 43013224
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 139  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||| ||| |||||||||||| ||||||| | || |||||||||||||||    
T  43013130 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgcccc 43013224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 12629902 - 12629834
Alignment:
Q  71 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 139  Q
    |||||||||| | ||| | || ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  12629902 tttaattgaggtaaatcatgtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 12629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 52
Target Start/End: Complemental strand, 918682 - 918651
Alignment:
Q  21 agtattgaatatagcttttattatttttaatt 52  Q
    ||||||||||||||||||||||||||||||||    
T  918682 agtattgaatatagcttttattatttttaatt 918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 25163491 - 25163430
Alignment:
Q  71 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 132  Q
    |||||||||| | ||| |||| ||||| ||| |||||||| ||||||| |||||||||||||    
T  25163491 tttaattgaggtaaataaagtaagatctattcatttattgtctatttaatgttccttatcca 25163430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 23037998 - 23038038
Alignment:
Q  19 agagtattgaatatagcttttattatttttaattagttgac 59  Q
    ||||||||||||| | ||||||||| |||||||||||||||    
T  23037998 agagtattgaatacaacttttattaattttaattagttgac 23038038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 4329720 - 4329599
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  4329720 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatt 4329621  T
Q  117 tactgttccttatccagtgccc 138  Q
    ||||||||||||||||||||||    
T  4329620 tactgttccttatccagtgccc 4329599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 39865298 - 39865420
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| | ||||||    
T  39865298 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatt 39865397  T
Q  117 tactgttccttatccagtgcccc 139  Q
    || ||||||||||||||||||||    
T  39865398 tattgttccttatccagtgcccc 39865420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 29770888 - 29770766
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||| | ||||||    
T  29770888 aaagagtattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatt 29770789  T
Q  117 tactgttccttatccagtgcccc 139  Q
    || ||||||||||||||||||||    
T  29770788 tattgttccttatccagtgcccc 29770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 30674429 - 30674557
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| ||||||||||||  |||| | |||    
T  30674429 tattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttatttattgcttattaattgt 30674528  T
Q  123 tccttatccagtgcccctggttaacattg 151  Q
    || |||||| ||||||| ||||| |||||    
T  30674529 tctttatccggtgcccccggttagcattg 30674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 9074713 - 9074598
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  |||||||||| |||||||||||| ||||||| |||    
T  9074713 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttatttattgtctatttattgt 9074614  T
Q  123 tccttatccagtgccc 138  Q
    || |||||| ||||||    
T  9074613 tctttatccggtgccc 9074598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 4330136 - 4330226
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 136  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||  |||| | |||||||||||||||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtgc 4330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 9914308 - 9914204
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| |  | ||| |||||||||  |||||||||||  ||||||| |||    
T  9914308 tattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattgt 9914209  T
Q  123 tcctt 127  Q
    |||||    
T  9914208 tcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 29771299 - 29771360
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 107  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||||  |||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttattta 29771360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 39864860 - 39864768
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 139  Q
    ||||||||| ||||||||  ||||| |||| |||||||||||||| ||||||  ||||||||| ||  |||| | || |||||||||||||||||    
T  39864860 ttttaattaattgacatagtttaca-tttatttgagatgaattaaatgagattcatttatttaatgcatattaattg-tccttatccagtgcccc 39864768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 45395560 - 45395426
Alignment:
Q  167 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  45395560 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattctct 45395461  T
Q  267 caccccatgttttcc-ttccaccgcttgatgtcca 300  Q
    || |||||||||||| |||||||||||||||||||    
T  45395460 catcccatgttttcctttccaccgcttgatgtcca 45395426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 23566889 - 23567011
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  ||||||||| | ||||||    
T  23566889 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatt 23566988  T
Q  117 tactgttccttatccagtgcccc 139  Q
    || ||||||||||||||||||||    
T  23566989 tattgttccttatccagtgcccc 23567011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 39737724 - 39737844
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| | ||||| ||||||||| | ||||||    
T  39737724 aaagaatattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatt 39737823  T
Q  117 tactgttccttatccagtgcc 137  Q
    || ||||||||||||||||||    
T  39737824 tattgttccttatccagtgcc 39737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 785770 - 785883
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    |||||||||||||  |||||| ||||||||| |||  |||| ||||||||| ||| || | ||| |||||||||| |||||||||||| ||||||| |||    
T  785770 tattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatgt 785869  T
Q  123 tccttatccagtgc 136  Q
    ||||||| ||||||    
T  785870 tccttattcagtgc 785883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 30385749 - 30385836
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 110  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| || ||||||| ||||||||||||    
T  30385749 tattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttatttattg 30385836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 39737293 - 39737232
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 107  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||  |||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttattta 39737232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 53153855 - 53153941
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttatt 109  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| |||||||||  || ||||||||    
T  53153855 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagattcatctatttatt 53153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 23566522 - 23566432
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcc 137  Q
    ||||||||||||||||||  ||||| |||| |||||||||||||||| ||||  ||||||||| ||  |||| | |||| |||||||||||||    
T  23566522 ttttaattagttgacatagtttaca-tttatttgagatgaattaagtaagatttatttatttaatgcatattaattgtt-cttatccagtgcc 23566432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 50470421 - 50470355
Alignment:
Q  217 ctattacaatccttggatgtttttctttccattaattaattatattctctcaccccatgttttcctt 283  Q
    ||||||| ||| |||||||||| | ||||| |||| |||||  |||||||| |||||||||||||||    
T  50470421 ctattaccatctttggatgtttatatttccgttaactaattgaattctctctccccatgttttcctt 50470355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 53153590 - 53153517
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactattta 118  Q
    ||||||||||||||| |||||  |||||||||| |||| ||  || ||| ||| |||||||||||| |||||||    
T  53153590 ttttaattagttgacttatatctcactttaatttagataaaccaattgaaatccatttatttattgcctattta 53153517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 166 - 300
Target Start/End: Complemental strand, 20052 - 19917
Alignment:
Q  166 tggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctc 265  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  20052 tggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctc 19953  T
Q  266 tcaccccatgttttcc-ttccaccgcttgatgtcca 300  Q
    ||| |||||||||||| |||||||||||||||||||    
T  19952 tcatcccatgttttcctttccaccgcttgatgtcca 19917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 31166954 - 31167076
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| | ||||||    
T  31166954 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatt 31167053  T
Q  117 tactgttccttatccagtgcccc 139  Q
    || ||||||||||||||||||||    
T  31167054 tattgttccttatccagtgcccc 31167076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 21971651 - 21971546
Alignment:
Q  21 agtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttact 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| | | |||||| |    
T  21971651 agtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagatc-atttatttaattattatttatt 21971553  T
Q  121 gttcctt 127  Q
    |||||||    
T  21971552 gttcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 27596084 - 27596002
Alignment:
Q  35 cttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactattta 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  27596084 cttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctattta 27596002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 28750927 - 28751045
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| |||||||||||| ||||||| |||    
T  28750927 tattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 28751025  T
Q  123 tccttatccagtgcccctgg 142  Q
    ||||||||||||||||||||    
T  28751026 tccttatccagtgcccctgg 28751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 38916392 - 38916507
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    |||| |||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| |||||||||| |||||||||||| ||||||| |||    
T  38916392 tattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttatttattgtctatttattgt 38916491  T
Q  123 tccttatccagtgccc 138  Q
    || |||||||||||||    
T  38916492 tctttatccagtgccc 38916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 27230578 - 27230474
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| || | ||| || ||||||  |||||||||||| ||||| | |||    
T  27230578 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttatttattgtctattaattgt 27230479  T
Q  123 tcctt 127  Q
    |||||    
T  27230478 tcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 15577578 - 15577468
Alignment:
Q  25 ttgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttc 124  Q
    ||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| ||||     ||| ||||||| |||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccattt-----ttgtctatttattgttc 15577484  T
Q  125 cttatccagtgcccct 140  Q
    ||||||||||||||||    
T  15577483 cttatccagtgcccct 15577468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 21972092 - 21972184
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 138  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||  ||||||||| ||  | || | |||||||||||||||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatccagtgccc 21972184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 32741787 - 32741895
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||||| ||||||| |||||| ||||||| |||| ||| ||||||||| || | ||  |||||||||| ||||||||||||  |||||| |||    
T  32741787 tattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattgt 32741886  T
Q  123 tccttatcc 131  Q
    || ||||||    
T  32741887 tcattatcc 32741895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 38916138 - 38916045
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 138  Q
    ||||||||||||||| |||||  |||||||||| |||| ||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||    
T  38916138 ttttaattagttgacttatatctcactttaatttagataaaccaattgagatctatttatttattgcctatttattatttcttatccagtgccc 38916045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 21948208 - 21948149
Alignment:
Q  19 agagtattgaatatagcttttattatttttaattagttgacatatattacactttaattg 78  Q
    ||||||||||||| || |||||||| ||||||||||||||| ||| ||||| ||| ||||    
T  21948208 agagtattgaatagagtttttattaattttaattagttgacttattttacattttgattg 21948149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 17922991 - 17922857
Alignment:
Q  167 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||    
T  17922991 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattctct 17922892  T
Q  267 caccccatgtttt--ccttccaccgcttgatgtcca 300  Q
    || ||||||||||  | |||||||||||||||||||    
T  17922891 ca-cccatgtttttcctttccaccgcttgatgtcca 17922857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 8701004 - 8700890
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||| | ||||||| |||||||||||| | |||| ||||||||||||| || | ||| |||||||||| || ||||||||| ||||||| |||    
T  8701004 tattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattgt 8700905  T
Q  123 tccttatccagtgcc 137  Q
    ||||||||| |||||    
T  8700904 tccttatccggtgcc 8700890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 12307301 - 12307388
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 110  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||||||||| ||||||||||||    
T  12307301 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttatttattg 12307388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 7727381 - 7727468
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 110  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  |||||||||||||||||||||||    
T  7727381 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttatttattg 7727468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 605096 - 604984
Alignment:
Q  23 tattgaatatagcttttattatttttaatta---gttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttac 119  Q
    ||||||||||| | ||||||| |||||||||   ||||| |||| ||| ||||||||| || | ||| |||||||||| |||||||||||| |||||||     
T  605096 tattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttat 604997  T
Q  120 tgttccttatcca 132  Q
    |||||||||||||    
T  604996 tgttccttatcca 604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 139
Target Start/End: Complemental strand, 12307064 - 12306970
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 139  Q
    ||||||||||||||| |||||  |||||||||| || | ||| || | ||||  |||||||||||| ||||||| | || |||||||||||||||    
T  12307064 ttttaattagttgacttatatctcactttaatttaggtaaatcaattaagattcatttatttattgtctatttattatttcttatccagtgcccc 12306970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 8701263 - 8701357
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 139  Q
    ||||||||||||||| |||||  |||||||||| |  | ||| || ||||||  |||||||||||| ||||||| | || |||| ||||||||||    
T  8701263 ttttaattagttgacttatatatcactttaatttaagtaaatcaattgagattcatttatttattgcctatttattatttcttaaccagtgcccc 8701357  T

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Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 26759325 - 26759207
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  26759325 aaagagtatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatt 26759226  T
Q  117 tactgttccttatccagtg 135  Q
    || ||||||||||||||||    
T  26759225 tattgttccttatccagtg 26759207  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 146757 - 146644
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| || |||||    
T  146757 aaagagtattgaatatagtttttattaattttaattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatt 146658  T
Q  117 tactgttccttatc 130  Q
    || ||||| |||||    
T  146657 tattgttcattatc 146644  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 308420 - 308301
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| |||||||||||| ||||||| |||    
T  308420 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 308321  T
Q  123 tccttatccagtgcccctgg 142  Q
    || |||||| ||||||||||    
T  308320 tcattatccggtgcccctgg 308301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 186790 - 186682
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| |||||||||||  ||||||| |||    
T  186790 tattgaatataacatttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgt 186691  T
Q  123 tccttatcc 131  Q
    |||||||||    
T  186690 tccttatcc 186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 187049 - 187140
Alignment:
Q  48 taattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 139  Q
    |||||||||||| |||||  |||||||||| || | || ||| ||||||  |||||||||||| ||||||| | || |||||||||||||||    
T  187049 taattagttgacttatatctcactttaatttaggtaaactaattgagattcatttatttattgcctatttattatttcttatccagtgcccc 187140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 147190 - 147251
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 107  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| || ||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatattta 147251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 25277141 - 25277195
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaatt 77  Q
    ||||||||||||| ||||||| |||||||||||| | |||| | |||||||||||    
T  25277141 tattgaatatagcatttattaattttaattagttaaaatatttcacactttaatt 25277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 39121834 - 39121956
Alignment:
Q  17 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  ||||||||| | ||||||    
T  39121834 aaagagtattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatt 39121933  T
Q  117 tactgttccttatccagtgcccc 139  Q
    || ||||||||||||||||||||    
T  39121934 tattgttccttatccagtgcccc 39121956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 3623594 - 3623465
Alignment:
Q  167 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 266  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||| | |||||||| | |||||||||||||| |||||||||| ||||||||||||||    
T  3623594 ggaaaatgctttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctct 3623495  T
Q  267 caccccatgttttcc-ttccaccgcttgat 295  Q
    |||||||| |||||| ||||| ||||||||    
T  3623494 caccccatattttcctttccatcgcttgat 3623465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 14394091 - 14393983
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||||| |||||||  ||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| ||||||||||||  |||||| |||    
T  14394091 tattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattgt 14393992  T
Q  123 tccttatcc 131  Q
    |||||||||    
T  14393991 tccttatcc 14393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 20983658 - 20983543
Alignment:
Q  24 attgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgtt 123  Q
    |||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  || ||||||| |||||||||||| ||||||| | ||    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattttt 20983559  T
Q  124 ccttatccagtgcccc 139  Q
     |||||||||||||||    
T  20983558 tcttatccagtgcccc 20983543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 25672380 - 25672272
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    |||| |||||||| ||||||| |||||||||||||| |||| ||||||||||||| | || ||  |||||||||| ||||||||||||  |||| | |||    
T  25672380 tattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattgt 25672281  T
Q  123 tccttatcc 131  Q
    |||||||||    
T  25672280 tccttatcc 25672272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 20983842 - 20983933
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 136  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||| ||| |||||||||||| ||||||| | || ||||||||||||    
T  20983842 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgc 20983933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 14394344 - 14394438
Alignment:
Q  45 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 139  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||||||  |||||||||||| ||||||| | || ||||| |||||||||    
T  14394344 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgagattcatttatttattgtctatttattatttcttattcagtgcccc 14394438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 40888900 - 40888792
Alignment:
Q  23 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 122  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||| ||||| |||||| ||||| ||||| | |||    
T  40888900 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttatgtattgcctattaattgt 40888801  T
Q  123 tccttatcc 131  Q
    | |||||||    
T  40888800 ttcttatcc 40888792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 23270014 - 23269946
Alignment:
Q  71 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 139  Q
    |||||||||| | ||| |||| ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  23270014 tttaattgaggtaaatcaagtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 23269946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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