View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_1D_high_12 (Length: 284)

Name: NF0438_1D_high_12
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_1D_high_12
NF0438_1D_high_12
[»] chr3 (7 HSPs)
chr3 (12-270)||(26432588-26432846)
chr3 (12-269)||(11897148-11897405)
chr3 (155-271)||(17718394-17718510)
chr3 (155-271)||(19019623-19019739)
chr3 (155-270)||(53608336-53608451)
chr3 (116-270)||(38647179-38647333)
chr3 (199-270)||(55024879-55024950)
[»] chr2 (9 HSPs)
chr2 (12-269)||(14653570-14653827)
chr2 (14-270)||(40328174-40328430)
chr2 (14-270)||(35135114-35135370)
chr2 (116-261)||(177504-177649)
chr2 (59-270)||(3778988-3779199)
chr2 (116-265)||(26791322-26791471)
chr2 (59-269)||(19265413-19265623)
chr2 (119-258)||(16322457-16322596)
chr2 (236-270)||(39012526-39012560)
[»] chr8 (4 HSPs)
chr8 (12-269)||(23132475-23132732)
chr8 (134-263)||(26587230-26587359)
chr8 (179-270)||(38348466-38348557)
chr8 (17-159)||(14760032-14760174)
[»] chr1 (4 HSPs)
chr1 (12-269)||(20284849-20285106)
chr1 (104-271)||(50236550-50236717)
chr1 (113-271)||(50451893-50452051)
chr1 (170-267)||(1524969-1525066)
[»] chr4 (7 HSPs)
chr4 (14-270)||(54477303-54477558)
chr4 (155-270)||(33803974-33804089)
chr4 (113-268)||(3881716-3881871)
chr4 (119-265)||(46784475-46784621)
chr4 (116-261)||(48848179-48848324)
chr4 (119-223)||(14307826-14307930)
chr4 (155-223)||(14291777-14291845)
[»] scaffold0036 (1 HSPs)
scaffold0036 (12-270)||(75904-76161)
[»] chr5 (4 HSPs)
chr5 (114-270)||(7817131-7817287)
chr5 (116-222)||(32874457-32874563)
chr5 (155-253)||(23945012-23945110)
chr5 (157-269)||(31814643-31814754)
[»] chr7 (2 HSPs)
chr7 (90-261)||(1579133-1579304)
chr7 (119-270)||(16769965-16770116)
[»] chr6 (4 HSPs)
chr6 (116-270)||(24893836-24893990)
chr6 (100-213)||(13599639-13599752)
chr6 (116-270)||(24990663-24990817)
chr6 (156-213)||(35233542-35233599)
[»] scaffold0214 (1 HSPs)
scaffold0214 (155-265)||(8968-9078)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 26432588 - 26432846
Alignment:
Q  12 ggacatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagc 111  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  112 ggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattc 211  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  212 caaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 11897405 - 11897148
Alignment:
Q  12 ggacatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagc 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||  ||| || |||||||||| |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  112 ggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattc 211  Q
     || |||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  212 caaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgt 269  Q
    |||||||||||||| || |  ||||  || |||||||||||||| |||||||||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 17718394 - 17718510
Alignment:
Q  155 ggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatga 254  Q
    ||||||||||||| ||||||||||||||||||||| || ||||  ||||| |||||||| |  |||||| || | ||||| || ||||||||||||||||    
T  17718394 ggatcaccctgtcagagaccatgagaaggcttgaagggaggcattttgtttccattccacaaaatagagaaggtggatgaggaaacacaatgcatgatga 17718493  T
Q  255 gtttgatggtgatgtcc 271  Q
    | |||||||||| ||||    
T  17718494 gcttgatggtgacgtcc 17718510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 19019623 - 19019739
Alignment:
Q  155 ggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatga 254  Q
    ||||||||||||| ||||||||||||||||||||| || ||||  ||||| |||||||| |  |||||| || | ||||| || ||||||||||||||||    
T  19019623 ggatcaccctgtcagagaccatgagaaggcttgaagggaggcattttgtttccattccacaaaatagagaaggtggatgaggaaacacaatgcatgatga 19019722  T
Q  255 gtttgatggtgatgtcc 271  Q
    | |||||||||| ||||    
T  19019723 gcttgatggtgacgtcc 19019739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 53608336 - 53608451
Alignment:
Q  155 ggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatga 254  Q
    ||||||||||||| ||||||||| |||||| ||||||  ||||  ||||| ||||||||||| |||||| || | || || || ||||||||||||||||    
T  53608336 ggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgatga 53608435  T
Q  255 gtttgatggtgatgtc 270  Q
    | ||||||||||||||    
T  53608436 gcttgatggtgatgtc 53608451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 38647179 - 38647333
Alignment:
Q  116 agcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaa 215  Q
    |||||||||||||| |  |||||||| || || || | ||||||||| |||| |||||| || |||||||| ||||| ||||  || || || |||||||    
T  38647179 agcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaa 38647278  T
Q  216 gtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
    | |||||| || | ||||| || ||||||||||||||||| ||||||||||||||    
T  38647279 gaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtgatgtc 38647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 55024879 - 55024950
Alignment:
Q  199 cttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
    |||||| ||||||||||| | |||| || | |||||||||||||||||||| ||||||||||| || |||||    
T  55024879 cttgttgccattccaaagaacagagaaggtggatgaagagacacaatgcataatgagtttgattgtaatgtc 55024950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 14653570 - 14653827
Alignment:
Q  12 ggacatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagc 111  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||||||||||  || || ||||| ||||||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  112 ggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattc 211  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  212 caaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgt 269  Q
    |||||||||||||| ||||  ||||  || |||||||||||||| |||||||||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 40328430 - 40328174
Alignment:
Q  14 acatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagcgg 113  Q
    |||||||||||||| || ||||| ||||  |  | |||||||   |||| ||| || ||||||||||| |||||| |||| ||||| ||||| ||| | |    
T  40328430 acatcatctgcaaagagtaggtgagataccttggcccccgtatttgtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacag 40328331  T
Q  114 atagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattcca 213  Q
    | || |||||||| || | |||||| |||||||| |||||||| ||||| || || || ||||||| |||||||||||| |  | |||||| ||||||||    
T  40328330 agagtttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattcca 40328231  T
Q  214 aagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
     |  || |||||||||| ||| |  |||||||||||||||||||||||||| |||||    
T  40328230 taaaattgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 40328174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 35135114 - 35135370
Alignment:
Q  14 acatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagcgg 113  Q
    |||||||||||||| || ||||| ||||  |  | |||||||   |||| ||| || ||||||||||| |||||| |||| ||||| ||||| ||| | |    
T  35135114 acatcatctgcaaagagtaggtgagataccttggcccccgtatttgtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacag 35135213  T
Q  114 atagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattcca 213  Q
    | || |||||||| || | |||||| |||||||| |||||||| ||||| || || || ||||||| |||||||||||| |  | |||||| ||||||||    
T  35135214 agagtttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca 35135313  T
Q  214 aagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
     |  || |||||||| | ||| |  |||||||||||||||||||||||||| |||||    
T  35135314 taaaattgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 35135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 116 - 261
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  116 agcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaa 215  Q
    |||||||||||||| |||||||| || ||||| ||||| || ||||| ||||  |||||||||| |||||||| ||| ||| | ||||| ||||||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  216 gtatagagtagctcgatgaagagacacaatgcatgatgagtttgat 261  Q
    | | |||| |  | || |||| ||||||||||||||||||||||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 59 - 270
Target Start/End: Original strand, 3778988 - 3779199
Alignment:
Q  59 gtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagcggatagcttttccatgcaaatgatgaagagataaggggacaacggat 158  Q
    |||| ||| |||||||||||||| |||||  |||| ||||| ||||| ||| | || || |||||||| || | |||||| |||||||| |||| ||| |    
T  3778988 gtgatttgtattggttcccatctcccttgattgacagcggaattgattgcaacagagagtttttccatacagaggatgaaaagataaggagacagcgggt 3779087  T
Q  159 caccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatgagttt 258  Q
    |||| || || || ||||||| |||||||||||| |  | |||||| |||||||| |  |  |||||||| | ||| |  ||||||||||||||||||||    
T  3779088 caccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataacaatgagtagcttggtgaggtaacacaatgcatgatgagttt 3779187  T
Q  259 gatggtgatgtc 270  Q
    |||||| |||||    
T  3779188 gatggtaatgtc 3779199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 265
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  116 agcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaa 215  Q
    ||||| ||||||||||  || || || || ||||| | |||||||||||| | ||| ||||||| ||||| |||||| |||||| | || ||||||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  216 gtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtg 265  Q
    | |||||| |||| |||||||  || |||||||||||||| |||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 269
Target Start/End: Complemental strand, 19265623 - 19265413
Alignment:
Q  59 gtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagcggatagcttttccatgcaaatgatgaagagataaggggacaacggat 158  Q
    |||| ||| |||||||||||||| |||||  |||| ||||| ||||| ||| | || || ||||||||  | | |||||| |||||||| |||| ||| |    
T  19265623 gtgatttgtattggttcccatctcccttgattgacagcggaattgattgcaacagagagtttttccatatagaggatgaaaagataaggagacagcgggt 19265524  T
Q  159 caccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatgagttt 258  Q
    |||| || || || ||||||| |||||||||||| |  | |||||| |||||||| |  |  |||||||| | ||| |  ||||||||||||||||||||    
T  19265523 caccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataacaaggagtagcttggtgaggtaacacaatgcatgatgagttt 19265424  T
Q  259 gatggtgatgt 269  Q
    |||||| ||||    
T  19265423 gatggtaatgt 19265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 258
Target Start/End: Complemental strand, 16322596 - 16322457
Alignment:
Q  119 ttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagta 218  Q
    |||||||||||||  ||||| || || || || | ||| ||||| ||||| || |||||||  ||||||||||| |||| |||||| |||||||| || |    
T  16322596 ttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgtttccattccatagga 16322497  T
Q  219 tagagtagctcgatgaagagacacaatgcatgatgagttt 258  Q
     ||| ||  | | ||| ||||||||||||||||| |||||    
T  16322496 gagaataattggctgaggagacacaatgcatgataagttt 16322457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 270
Target Start/End: Complemental strand, 39012560 - 39012526
Alignment:
Q  236 gagacacaatgcatgatgagtttgatggtgatgtc 270  Q
    ||||||||||||||||||||||||||||| |||||    
T  39012560 gagacacaatgcatgatgagtttgatggtaatgtc 39012526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 23132475 - 23132732
Alignment:
Q  12 ggacatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagc 111  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||| ||| ||||||||||||||| ||| || ||||||||||||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  112 ggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattc 211  Q
     || |||||||||||||||| |||||| |||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  212 caaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgt 269  Q
    |||||||||||||| || |  ||||  || |||||||||||||  |||||||||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 263
Target Start/End: Complemental strand, 26587359 - 26587230
Alignment:
Q  134 atgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatg 233  Q
    |||||||| || || ||||| || ||||| |||||||| ||||||| ||||||||| || ||||| ||||| ||||| ||||| || | | || | ||||    
T  26587359 atgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttcaaaggatggtgaaggtagatg 26587260  T
Q  234 aagagacacaatgcatgatgagtttgatgg 263  Q
    ||| ||| ||||||||||||||||||||||    
T  26587259 aagtgacgcaatgcatgatgagtttgatgg 26587230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 38348557 - 38348466
Alignment:
Q  179 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
    |||||||||||||| | |||  |||| ||||||||||| |||||| || | | ||| |  ||||||||||||||||| ||||||||||||||    
T  38348557 gaaggcttgaaaggagacaatctgttgccattccaaaggatagagaaggtgggtgaggtaacacaatgcatgatgagcttgatggtgatgtc 38348466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 14760174 - 14760032
Alignment:
Q  17 tcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagcggata 116  Q
    |||||||||||||| ||||| ||||  || |||||||||   |||| ||| |  |||||||| ||||||||  |||| || || || ||||||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  117 gcttttccatgcaaatgatgaagagataaggggacaacggatc 159  Q
    |||||||||| ||||  |||||||| || ||||||||||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatc 14760032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 20285106 - 20284849
Alignment:
Q  12 ggacatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagc 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||| ||| || ||||||||||||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  112 ggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattc 211  Q
     || |||||||||||||||| |||||| ||||||||||||||||||||||| ||||| || ||||||||||||| |||||||||||||   ||||| |||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  212 caaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgt 269  Q
    |||||||||||||| || |  ||||  || |||||||||||||| |||||||||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  104 atagcagcggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgt 203  Q
    |||||| | ||||| || ||||| || | |||||| || |||||||| | ||||||||| | || ||| ||||||| |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  204 tcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtcc 271  Q
    |||| ||||| |  ||||||||| | | ||| |||||||||||||||||||||||| |||||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 271
Target Start/End: Complemental strand, 50452051 - 50451893
Alignment:
Q  113 gatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattcc 212  Q
    |||||||| ||||| ||||  |||||||| ||||| || | ||||||||| |||||||| ||||| | ||| |||||| ||||||  ||||| |||||||    
T  50452051 gatagcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcc 50451952  T
Q  213 aaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtcc 271  Q
    | |  |||||| |  | || || | ||||||||||||||| ||||||||||||||||||    
T  50451951 ataagatagagaaagtggaggaggtgacacaatgcatgataagtttgatggtgatgtcc 50451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 1525066 - 1524969
Alignment:
Q  170 agaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgat 267  Q
    ||||| || |||||||||||||| || || ||||| ||||||||||| |||||| ||   |  || |  |||||||||||||||||||||||||||||    
T  1525066 agaccgtgggaaggcttgaaaggaggtaatttgttaccattccaaagaatagagaaggcaggagaggtaacacaatgcatgatgagtttgatggtgat 1524969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 54477303 - 54477558
Alignment:
Q  14 acatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagcgg 113  Q
    |||||||||||||| |||||||| ||||  || |||||| ||   |||| |||||||||||||||  | |||||  ||||| | || |||||||||   |    
T  54477303 acatcatctgcaaagaggaggtgagatatttggggcccc-tatttgtgatttggattggttcccaattcccttgattgacgactgaattgatagcaatag 54477401  T
Q  114 atagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattcca 213  Q
    | || |||||||||||||  |||||||||||||||||||| |||||||| || || |||||||| | |||||||||||  || | |||||| ||||||||    
T  54477402 agagattttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattcca 54477501  T
Q  214 aagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
    ||| ||| ||||  | ||||| || ||||||||||||||||| ||||||||||||||    
T  54477502 aaggataaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 33804089 - 33803974
Alignment:
Q  155 ggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatga 254  Q
    ||||||||||||| |||||  || |||||||||||||| ||||  ||||| |||||||| |||||||||||  | ||||| || ||||||||||||||||    
T  33804089 ggatcaccctgtctgagactgtgtgaaggcttgaaaggaggcattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgatga 33803990  T
Q  255 gtttgatggtgatgtc 270  Q
    | ||||||||||||||    
T  33803989 gcttgatggtgatgtc 33803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 268
Target Start/End: Complemental strand, 3881871 - 3881716
Alignment:
Q  113 gatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattcc 212  Q
    |||||||||||||| ||||  |||||||| ||| | || | ||||||||| |||||||| ||||| | ||| |||||| ||||||  ||||| |||||||    
T  3881871 gatagcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcc 3881772  T
Q  213 aaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatg 268  Q
    | |  |||||| || | || || | ||||||||||||||| |||||||||||||||    
T  3881771 ataagatagagaaggtggaggaggtgacacaatgcatgataagtttgatggtgatg 3881716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 46784475 - 46784621
Alignment:
Q  119 ttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagta 218  Q
    |||| |||||||| ||||||||| || || || |  |||||||| ||||  || ||||||| ||| |||||||||||||| || || ||||||||||| |    
T  46784475 tttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattccaaagga 46784574  T
Q  219 tagagtagctcgatgaagagacacaatgcatgatgagtttgatggtg 265  Q
      ||| |  | ||||| |  ||||||||||||||||| |||||||||    
T  46784575 cggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 261
Target Start/End: Complemental strand, 48848324 - 48848179
Alignment:
Q  116 agcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaa 215  Q
    |||||||||||||| |  || ||||| |||||||| | |||||||||||||| ||| ||||||| ||| |  || || ||||||||||| |||||| | |    
T  48848324 agcttttccatgcagagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttccattctaga 48848225  T
Q  216 gtatagagtagctcgatgaagagacacaatgcatgatgagtttgat 261  Q
    | || ||| |  | || ||| | ||||||||||||||||| |||||    
T  48848224 ggatggagaaagttgaagaacaaacacaatgcatgatgagattgat 48848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 14307930 - 14307826
Alignment:
Q  119 ttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagta 218  Q
    |||||||| ||||||||||| || ||||| ||    ||||| || |||| ||| ||||| |||||||| |||||  ||| |||||||||||||||||| |    
T  14307930 ttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaa 14307831  T
Q  219 tagag 223  Q
    |||||    
T  14307830 tagag 14307826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 14291845 - 14291777
Alignment:
Q  155 ggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagag 223  Q
    ||||| || |||| ||| ||||| |||||||| |||||  ||| |||||||||||||||||| ||||||    
T  14291845 ggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattccaaagaatagag 14291777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 76161 - 75904
Alignment:
Q  12 ggacatcatctgcaaataggaggtgggataaatgcggccccgtaggagtgagttggattggttcccatcttccttgggtgacggcggagttgatagcagc 111  Q
    |||||||||||||||| | |||||| ||||  || |||||| ||   |||| ||||||   ||||||| | |||||| |||  |||   ||||||||| |    
T  76161 ggacatcatctgcaaagaagaggtgagatacctggggccccctatttgtgatttggatcacttcccatgtcccttggttgatagcgagattgatagcaac 76062  T
Q  112 ggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattc 211  Q
     || |||||||||||||||| |||||| ||||||||||||||| | ||||| |||| ||||||||||| ||||||||| |  |||| |||||| ||||||    
T  76061 agagagcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgtt-ccattc 75963  T
Q  212 caaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
    || |  || |||||||| |||||||| | ||||||||  ||||| ||||| ||||||||    
T  75962 cataaaattgagtagctagatgaagaaatacaatgcaaaatgagcttgatagtgatgtc 75904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 114 - 270
Target Start/End: Complemental strand, 7817287 - 7817131
Alignment:
Q  114 atagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattcca 213  Q
    ||||||||||||||||||  ||||| || ||||| || || || |||||||||| ||||||||||| |||||||||||  || |  ||||||||||||||    
T  7817287 atagcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattcca 7817188  T
Q  214 aagtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
     |  ||||||||| | || || || ||||||||||||||||| ||||| ||||||||    
T  7817187 taaaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  116 agcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaa 215  Q
    ||||||||||||||||||||||| | ||| || || | ||| || || || ||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  216 gtataga 222  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 23945110 - 23945012
Alignment:
Q  155 ggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatg 253  Q
    ||||||||||||| |||||| || |||||||||||||| || |  ||||| |||||||| |||||||||||  | ||||| || |||||||||||||||    
T  23945110 ggatcaccctgtctgagaccgtgtgaaggcttgaaaggaggaattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgatg 23945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 31814754 - 31814643
Alignment:
Q  157 atcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatgagt 256  Q
    |||||| |||| |||||||||||| ||||| || || ||||  ||||| ||||||||||| |||||  |  | ||||| || |||||||||||||||||     
T  31814754 atcaccttgtctgagaccatgagagggcttaaatgg-ggcattttgttaccattccaaaggatagaaaaagtagatgaggaaacacaatgcatgatgagc 31814656  T
Q  257 ttgatggtgatgt 269  Q
    ||||| |||||||    
T  31814655 ttgatagtgatgt 31814643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 261
Target Start/End: Original strand, 1579133 - 1579304
Alignment:
Q  90 tgacggcggagttgatagcagcggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaa 189  Q
    ||||||||  |||||| || | ||| ||||||||||||||||  || ||||| |||||||| | |||||||||||||| ||| ||||||| ||| |  ||    
T  1579133 tgacggcgttgttgatggctgaggagagcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaa 1579232  T
Q  190 aggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatgagtttgat 261  Q
     || ||||||||||| | |||| | || |||||| |  | || ||||| ||||||||||||||||| |||||    
T  1579233 gggaggcaacttgtttctattctagagaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 270
Target Start/End: Original strand, 16769965 - 16770116
Alignment:
Q  119 ttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagta 218  Q
    |||||||| || | ||||||||||||||| || |  |||||||| ||||| |||||||||| ||| |||||| ||||||| ||||| |||||||| |  |    
T  16769965 ttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccattccataaaa 16770064  T
Q  219 tagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
    ||||| |  | || ||||| ||||| ||||| || ||||||||||| |||||    
T  16770065 tagagaaagtggaagaagaaacacagtgcataataagtttgatggtaatgtc 16770116  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 24893836 - 24893990
Alignment:
Q  116 agcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaa 215  Q
    |||||||||||||| |  ||||| |||||||| || | ||| ||||| |||| ||||||||| |  ||||||||||| ||||  ||||| |||||||| |    
T  24893836 agcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattccata 24893935  T
Q  216 gtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
     ||| ||| |  | || || | |||||||||||||||||| ||||||||||||||    
T  24893936 atatggagaatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 13599752 - 13599639
Alignment:
Q  100 gttgatagcagcggatagcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaac 199  Q
    |||||| ||||| || || |||||||| || | ||||||||||||||| || |  |||||||| || |||||| |||||| |||||||||  |||| |||    
T  13599752 gttgatggcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaac 13599653  T
Q  200 ttgttcccattcca 213  Q
    ||||| ||||||||    
T  13599652 ttgttaccattcca 13599639  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 270
Target Start/End: Original strand, 24990663 - 24990817
Alignment:
Q  116 agcttttccatgcaaatgatgaagagataaggggacaacggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaa 215  Q
    ||||| ||||||||||  ||||| |||||||| || | ||| ||||| |||| ||||||||| |  ||||||||||| ||||  ||||| || ||||| |    
T  24990663 agcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttccata 24990762  T
Q  216 gtatagagtagctcgatgaagagacacaatgcatgatgagtttgatggtgatgtc 270  Q
      |||||  |  | || || | |||||| ||||||||||||||||||||||||||    
T  24990763 aaatagaaaaagtggaggaggtgacacagtgcatgatgagtttgatggtgatgtc 24990817  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 35233599 - 35233542
Alignment:
Q  156 gatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattcca 213  Q
    ||||||| |||||||||||||| | ||||||||||   ||||||||||| ||||||||    
T  35233599 gatcaccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattcca 35233542  T

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Target: scaffold0214 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 9078 - 8968
Alignment:
Q  155 ggatcaccctgtcggagaccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtagctcgatgaagagacacaatgcatgatga 254  Q
    |||||||||||   ||| ||||||||||||| |||||| |||| | | || ||||||||||| |||||| | || ||||| |  || |||||||||||||    
T  9078 ggatcaccctgcgtgaggccatgagaaggctcgaaaggaggcagcctattaccattccaaagaatagagaatctggatgaggtaacgcaatgcatgatga 8979  T
Q  255 gtttgatggtg 265  Q
    | |||||||||    
T  8978 gcttgatggtg 8968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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