View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_1D_high_14 (Length: 273)

Name: NF0438_1D_high_14
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_1D_high_14
NF0438_1D_high_14
[»] chr1 (11 HSPs)
chr1 (16-253)||(49369761-49369998)
chr1 (24-247)||(41342807-41343030)
chr1 (24-223)||(27029976-27030175)
chr1 (24-247)||(10003931-10004154)
chr1 (59-148)||(24545091-24545180)
chr1 (18-127)||(28520830-28520939)
chr1 (184-253)||(5557261-5557330)
chr1 (65-124)||(37668976-37669035)
chr1 (60-127)||(26996083-26996150)
chr1 (84-133)||(49869309-49869358)
chr1 (54-134)||(48710109-48710189)
[»] chr4 (23 HSPs)
chr4 (16-251)||(22340575-22340810)
chr4 (16-251)||(29123429-29123665)
chr4 (16-253)||(4303193-4303430)
chr4 (24-247)||(18116381-18116604)
chr4 (16-194)||(17826772-17826950)
chr4 (24-247)||(23158149-23158372)
chr4 (24-247)||(36279202-36279425)
chr4 (22-253)||(8110912-8111143)
chr4 (24-247)||(51872685-51872908)
chr4 (99-253)||(15705634-15705788)
chr4 (14-251)||(12915787-12916024)
chr4 (16-251)||(3621498-3621733)
chr4 (27-247)||(15649069-15649289)
chr4 (43-124)||(50693772-50693853)
chr4 (43-124)||(36951324-36951405)
chr4 (189-253)||(17838698-17838762)
chr4 (43-124)||(17469142-17469223)
chr4 (188-247)||(6614197-6614256)
chr4 (59-131)||(24059759-24059831)
chr4 (182-253)||(29192472-29192543)
chr4 (180-235)||(36951213-36951268)
chr4 (180-235)||(50693909-50693964)
chr4 (180-235)||(17469279-17469334)
[»] chr3 (15 HSPs)
chr3 (16-253)||(42462714-42462951)
chr3 (16-253)||(8595251-8595488)
chr3 (27-251)||(23603259-23603482)
chr3 (24-247)||(23571620-23571843)
chr3 (16-253)||(48547548-48547785)
chr3 (24-247)||(3514684-3514907)
chr3 (27-247)||(17153809-17154029)
chr3 (24-247)||(9819060-9819283)
chr3 (72-247)||(53152132-53152307)
chr3 (16-191)||(42459294-42459469)
chr3 (43-235)||(16663988-16664180)
chr3 (43-124)||(52196409-52196490)
chr3 (51-253)||(39632858-39633060)
chr3 (60-124)||(10754186-10754250)
chr3 (182-238)||(10754072-10754128)
[»] scaffold0032 (1 HSPs)
scaffold0032 (16-253)||(58387-58624)
[»] chr5 (12 HSPs)
chr5 (16-253)||(11266019-11266256)
chr5 (22-253)||(27891692-27891923)
chr5 (28-247)||(5824972-5825191)
chr5 (27-247)||(6678580-6678798)
chr5 (47-253)||(29150299-29150504)
chr5 (24-235)||(31962671-31962882)
chr5 (131-247)||(10462243-10462359)
chr5 (43-124)||(29322916-29322997)
chr5 (43-124)||(38931892-38931973)
chr5 (46-124)||(8896369-8896447)
chr5 (180-253)||(8895378-8895451)
chr5 (180-253)||(38931763-38931836)
[»] chr2 (9 HSPs)
chr2 (16-253)||(38938466-38938701)
chr2 (24-244)||(30275892-30276112)
chr2 (27-247)||(32349874-32350094)
chr2 (27-247)||(23384843-23385063)
chr2 (28-247)||(21963408-21963627)
chr2 (28-201)||(21964639-21964812)
chr2 (77-247)||(27914653-27914823)
chr2 (43-124)||(1258584-1258665)
chr2 (44-222)||(22300788-22300966)
[»] scaffold0041 (1 HSPs)
scaffold0041 (24-253)||(74292-74521)
[»] chr7 (19 HSPs)
chr7 (24-253)||(40891763-40891992)
chr7 (24-247)||(586784-587007)
chr7 (27-247)||(37075592-37075812)
chr7 (24-247)||(12121586-12121809)
chr7 (24-247)||(24819697-24819920)
chr7 (39-247)||(36575396-36575604)
chr7 (27-247)||(9403134-9403347)
chr7 (27-247)||(34981847-34982067)
chr7 (16-253)||(20705483-20705720)
chr7 (16-253)||(20873527-20873764)
chr7 (48-235)||(27868912-27869099)
chr7 (43-133)||(27987585-27987675)
chr7 (43-124)||(22865766-22865847)
chr7 (43-124)||(47548969-47549050)
chr7 (43-124)||(47553412-47553493)
chr7 (43-148)||(18815411-18815516)
chr7 (54-148)||(8457213-8457307)
chr7 (180-235)||(45649316-45649371)
chr7 (46-127)||(5196753-5196834)
[»] chr8 (6 HSPs)
chr8 (24-247)||(26077725-26077948)
chr8 (22-215)||(31423238-31423431)
chr8 (43-253)||(29532351-29532561)
chr8 (43-239)||(26390260-26390456)
chr8 (43-124)||(10801698-10801779)
chr8 (183-247)||(2959748-2959812)
[»] chr6 (8 HSPs)
chr6 (24-247)||(18295395-18295618)
chr6 (16-239)||(667283-667496)
chr6 (16-253)||(28604878-28605115)
chr6 (24-247)||(2894237-2894460)
chr6 (43-251)||(7218368-7218576)
chr6 (27-217)||(17227966-17228156)
chr6 (100-223)||(9759578-9759701)
chr6 (43-124)||(5391535-5391616)
[»] scaffold0003 (1 HSPs)
scaffold0003 (43-251)||(224744-224952)
[»] scaffold0289 (1 HSPs)
scaffold0289 (43-148)||(11164-11269)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 49369998 - 49369761
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49369998 tggacaccaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagact 49369899  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49369898 tgctacaaaggacaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggaggaggaaagggatcatttgttt 49369799  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49369798 tttcaatgtgattattatggtcgattatggctcttgat 49369761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 41342807 - 41343030
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41342807 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaa 41342906  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    ||||||||||||||||||||||||||||| ||||||| |||| ||||||||  ||||| |||||||||||||||||||| |||||||||||||| |||||    
T  41342907 aggacaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 41343006  T
Q  224 tgattattatggtcgattatggct 247  Q
    ||||||||||||||| ||||||||    
T  41343007 tgattattatggtcggttatggct 41343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 27030175 - 27029976
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| ||    
T  27030175 aacatcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttttgaatagacttgctataa 27030076  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||| ||||||||||||||| ||||||| |||| ||||||||  ||  | ||||||||||||||||||||||||||||||||||| |||||    
T  27030075 aggataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagagatcatttgtttttccaatg 27029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 10004154 - 10003931
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| |||||||||||||||||||||||||    
T  10004154 aacatcactgcagattttgatcaatttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaa 10004055  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||| |||| ||||||| || ||||||| |||| ||||||||  ||  | |||||||||||||||||||| ||||||||||||||  ||||    
T  10004054 aggataatcttcgtaagaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggaggaaagggatcatttgtttttcgaatg 10003955  T
Q  224 tgattattatggtcgattatggct 247  Q
     || | ||||||||| ||||||||    
T  10003954 cgacttttatggtcggttatggct 10003931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 24545091 - 24545180
Alignment:
Q  59 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgt 148  Q
    ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  24545091 taaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataatcttcgaaagagaaatgt 24545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 28520830 - 28520939
Alignment:
Q  18 gacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttg 117  Q
    ||||| ||||||| || ||||||| |||||||||| ||||||||||||||| | ||||| || || || ||||| ||||||||||| |||||||||||||    
T  28520830 gacattaacatcattgaagagtttcatcaatttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttg 28520929  T
Q  118 ctacaaagga 127  Q
    ||||| ||||    
T  28520930 ctacagagga 28520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 5557330 - 5557261
Alignment:
Q  184 gtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 253  Q
    ||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||| ||||||||    
T  5557330 gtggtaaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttgat 5557261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 37669035 - 37668976
Alignment:
Q  65 ggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37669035 ggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgatacaaa 37668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 26996150 - 26996083
Alignment:
Q  60 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaagga 26996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 49869309 - 49869358
Alignment:
Q  84 atttttgtttggcgtctctttctgaatagacttgctacaaaggacaatct 133  Q
    ||||||||||||||||| ||||| |||||| ||||||  |||||||||||    
T  49869309 atttttgtttggcgtctgtttctaaatagatttgctatgaaggacaatct 49869358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 48710189 - 48710109
Alignment:
Q  54 tggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatctt 134  Q
    ||||||||||| ||||| || || || ||  ||||||||||||| |||||  ||||||||||| |||| ||||| ||||||    
T  48710189 tggcttaaagcagttcctttgaaggtgaatctttttgtttggcgactcttcttgaatagacttcctaccaaggataatctt 48710109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 22340810 - 22340575
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22340810 tggacatcaatatcactgcagtgtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctaaatagact 22340711  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22340710 tgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtgtggtaaggaggaggaaagagatcatttgttt 22340611  T
Q  216 tttcaatgtgattattatggtcgattatggctcttg 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  22340610 tttcaatgtgattattatggtcgattatggctcttg 22340575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 29123429 - 29123665
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggtt-cccttaaaagttaacatttttgtttggcgtctctttctgaatagac 114  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29123429 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggtttcccttaaaagttaacatttttgtttggcgtctctttctgaatagac 29123528  T
Q  115 ttgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgtt 214  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29123529 ttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagagaccatttgtt 29123628  T
Q  215 ttttcaatgtgattattatggtcgattatggctcttg 251  Q
    |||||||||||||| ||||||||||||||||||||||    
T  29123629 ttttcaatgtgatttttatggtcgattatggctcttg 29123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 4303193 - 4303430
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  4303193 tggacatcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagact 4303292  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  4303293 tgctacaaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 4303392  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  4303393 tttcaatgtgattattatggtcgattatgactcttgat 4303430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 18116381 - 18116604
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18116381 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaa 18116480  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    ||||||||||||||||||||||||||||| ||||||| |||| ||||||||  ||||| |||||||||||||||||||| |||||||||||||| |||||    
T  18116481 aggacaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 18116580  T
Q  224 tgattattatggtcgattatggct 247  Q
    ||||||||||||||| ||||||||    
T  18116581 tgattattatggtcggttatggct 18116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 17826772 - 17826950
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17826772 tggacatcaatatcactgtagagtttgatcaatttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagact 17826871  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggag 194  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17826872 tgctacaaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 23158149 - 23158372
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||| | |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  23158149 aacatcactgcatattttgatcaatttttatggcttaaagcagtccccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaa 23158248  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||||||||||||||| ||| ||||||| |||| ||||||||  || || |||||||||||||||||||| |||||||||||||| ||||     
T  23158249 aggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaata 23158348  T
Q  224 tgattattatggtcgattatggct 247  Q
    ||||||||||||||||||||||||    
T  23158349 tgattattatggtcgattatggct 23158372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 36279202 - 36279425
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  36279202 aacatcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaa 36279301  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||| ||||||||||| ||| ||||||| |||| ||||||||  || || ||||||||||||||| |||| |||||||||||||| |||||    
T  36279302 aggataatcttcgtaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaaaagggatcatttgtttttccaatg 36279401  T
Q  224 tgattattatggtcgattatggct 247  Q
    || |||||||||||||||||||||    
T  36279402 tgcttattatggtcgattatggct 36279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 8111143 - 8110912
Alignment:
Q  22 tcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||    
T  8111143 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaac 8111044  T
Q  122 aaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaa 221  Q
    ||||||||| || ||||||||||| ||| || ||| | | ||||  ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||    
T  8111043 aaaggacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttcttttttcaa 8110944  T
Q  222 tgtgattattatggtcgattatggctcttgat 253  Q
    |||||| |||||||||||||||||||||||||    
T  8110943 tgtgatcattatggtcgattatggctcttgat 8110912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 51872908 - 51872685
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  51872908 aacatcactgcagattttgttcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaa 51872809  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||||||||||||||| ||| ||||||| |||| ||| | ||  || || | |||||||||||||||||| |||||||||||||| |||||    
T  51872808 aggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcctatggtgctttatttggtaaggaggaggaaagggatcatttgtttttccaatg 51872709  T
Q  224 tgattattatggtcgattatggct 247  Q
     |||||||||||||||||||||||    
T  51872708 cgattattatggtcgattatggct 51872685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 99 - 253
Target Start/End: Original strand, 15705634 - 15705788
Alignment:
Q  99 ctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggagg 198  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  199 aaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 253  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15705734 aaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 15705788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 12916024 - 12915787
Alignment:
Q  14 gatggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaataga 113  Q
    |||||||| ||| ||||||| ||| ||| | ||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12916024 gatggacaccaagatcactgaagattttaaccaattcttgtggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctctttctgaataga 12915925  T
Q  114 cttgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgt 213  Q
     ||||||||||| ||||  | ||||| ||||||||||||  |||||  |||| |||||||||||||||||||||||||||||||||||||||  |||| |    
T  12915924 attgctacaaagaacaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtgtggtaaggaggaggaaagagacaatttat 12915825  T
Q  214 tttttcaatgtgattattatggtcgattatggctcttg 251  Q
    |||||||||||||  ||||||| || ||||||||||||    
T  12915824 tttttcaatgtgaccattatgggcggttatggctcttg 12915787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 3621733 - 3621498
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  3621733 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 3621634  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||| ||||||||||| || || |||||||| || ||| ||| | | ||||  ||||| ||| |||||||||||||||||||||||||||| ||||| |||    
T  3621633 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtgtggtaaggaggaggaaagagaccattttttt 3621534  T
Q  216 tttcaatgtgattattatggtcgattatggctcttg 251  Q
    || ||||||||| |||||||||| ||||||||||||    
T  3621533 ttccaatgtgatcattatggtcggttatggctcttg 3621498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 15649069 - 15649289
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||| ||||||||||||||| || |||||||||||||| || || ||||| ||||| |||||||||||| | |||||||||||| | |||||||||||||    
T  15649069 atcaatgcagagtttgatcatttattatggcttaaagcagtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaagg 15649168  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    | |||||||||||| ||||||||||  ||||||| || | || |||||   | || ||||||||||||||||||||||| ||||| ||||||||||||||    
T  15649169 ataatcttcgcaagcggaatgtcctcgaggctaccaacgttttttgtggtactttatgtggtaaggaggaggaaagagaccatttattttttcaatgtga 15649268  T
Q  227 ttattatggtcgattatggct 247  Q
    |||||||||||| ||||||||    
T  15649269 ttattatggtcggttatggct 15649289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 50693772 - 50693853
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  50693772 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 50693853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 36951405 - 36951324
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36951405 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtatggcgtctctttctgaatagacttgctacaaa 36951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 17838698 - 17838762
Alignment:
Q  189 aaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 253  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 17838762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 17469142 - 17469223
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||| ||||||||| | ||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  17469142 atcattttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcatctctttctgaatagacttgctacaaa 17469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 6614197 - 6614256
Alignment:
Q  188 taaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggct 247  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  6614197 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 6614256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 24059831 - 24059759
Alignment:
Q  59 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaat 131  Q
    |||| ||||| | ||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaat 24059759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 29192472 - 29192543
Alignment:
Q  182 gtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 253  Q
    |||||||||||| |||||||| || ||| |||||||||| |||||| ||||||||||| | |||||||||||    
T  29192472 gtgtggtaaggaagaggaaagggaccatctgttttttcattgtgatcattatggtcgactttggctcttgat 29192543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 36951268 - 36951213
Alignment:
Q  180 ttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatgg 235  Q
    |||||||||||||| |||||||| ||||||||||||||| | |||||| |||||||    
T  36951268 ttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 36951213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 50693909 - 50693964
Alignment:
Q  180 ttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatgg 235  Q
    |||||||||||||| |||||||| ||||||||||||||| | |||||| |||||||    
T  50693909 ttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 50693964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 17469279 - 17469334
Alignment:
Q  180 ttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatgg 235  Q
    |||| ||||||||| |||||||| ||||||||||||||| | |||||| |||||||    
T  17469279 ttgtttggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 17469334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 42462951 - 42462714
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42462951 tggacatcaacattactgcagagtttgatcaatttttatggcttaaaacggctcccttaaaagttaacatttttgtttggcgtttctttctgaatagact 42462852  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||||||||||||||    
T  42462851 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgtatgataaggaggaggaaagagatcatttgttt 42462752  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  42462751 tttcaatgtgattattatggtcggttatggcttttgat 42462714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 8595488 - 8595251
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8595488 tggacatcaatatcattgcagagtttgatcaatttctatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagact 8595389  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| || |||||||||    
T  8595388 tgctacaaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgctaaggaggaggaaagggaccatttgttt 8595289  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  8595288 tttcaatgtgattattatggtcgtttatggctcttgat 8595251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 23603482 - 23603259
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23603482 atcattgcggagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctactaagg 23603383  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23603382 acaaccttcgcaagaggaatgtccttca-gctacaaatacttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatctgttttttcaatgtga 23603284  T
Q  227 ttattatggtcgattatggctcttg 251  Q
    || |||||||||| |||||||||||    
T  23603283 tttttatggtcgactatggctcttg 23603259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 23571620 - 23571843
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  23571620 aacatcactgtagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaa 23571719  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||||||||||||||||| |||||||||| ||||||| |||| ||||||||  || || |||||||||||||||||||| |||||||||||||| |||||    
T  23571720 aggacaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 23571819  T
Q  224 tgattattatggtcgattatggct 247  Q
     |||||||||||||| ||||||||    
T  23571820 cgattattatggtcggttatggct 23571843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 48547785 - 48547548
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||    
T  48547785 tggacttcaacatcactgcagagtttaatcaatttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagact 48547686  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||| ||||||||||| || ||||||||||| |||||| ||| | | |||| |||||| ||||||||||||||||||||||||||||| || |||||||||    
T  48547685 tgcaacaaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 48547586  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    |||||||||||| |||||||||||||||||||||||||    
T  48547585 tttcaatgtgatcattatggtcgattatggctcttgat 48547548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 3514907 - 3514684
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  3514907 aacatcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaa 3514808  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||||||||||||||| ||| ||||||  |||| ||||||||  || || |||||||||||||||||||| |||||||||||||| |||||    
T  3514807 aggataatcttcgcaagaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 3514708  T
Q  224 tgattattatggtcgattatggct 247  Q
     |||||||||||||| ||||||||    
T  3514707 cgattattatggtcgcttatggct 3514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 17153809 - 17154029
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||| |||||||||||||||||||||    
T  17153809 atcaatgcagagtttgatcaatttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaaagg 17153908  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    | |||||||||||||||||||||||  ||||||| |||| || |||||  || || |||||||| ||||||||||| |||||||||||||| ||||||||    
T  17153909 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagggatcatttgtttttccaatgtga 17154008  T
Q  227 ttattatggtcgattatggct 247  Q
    |||||||||||| ||||||||    
T  17154009 ttattatggtcggttatggct 17154029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 9819283 - 9819060
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| || ||||||||||||||||||||||    
T  9819283 aacatcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaa 9819184  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||| ||||||||||||||| ||||||| |||| ||||||||  || || ||||||||||||||||| |  |||||||||||||| |||||    
T  9819183 aggataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggacaaggatcatttgtttttccaatg 9819084  T
Q  224 tgattattatggtcgattatggct 247  Q
     || | ||||||||| ||||||||    
T  9819083 cgacttttatggtcgtttatggct 9819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 53152132 - 53152307
Alignment:
Q  72 ttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttctt 171  Q
    ||||||||||| |||||||||||| | ||||||| |||| |||||||||||||||| |||||||||||||||||||||||  ||||||| |||| || ||    
T  53152132 ttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgtttttt 53152231  T
Q  172 gtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggct 247  Q
    |||  || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53152232 gtggtgctttatgtggcaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggct 53152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 42459294 - 42459469
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||| ||||||||||| ||| ||| | ||||| ||||||||||| | |||||| ||||| ||||||||||||||||| ||||| |||||||||||| |    
T  42459294 tggacaacaacatcactgaagattttaaccaattcttatggcttaaggaggttccgttaaaggttaacatttttgtttgacgtctttttctgaatagaat 42459393  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaag 191  Q
    |||||||||||||||  | | ||| |||||||||||| ||||||  || |  ||||||||| ||||||||||||||    
T  42459394 tgctacaaaggacaacttgcacaaaaggaatgtccttgaggctaacaaagtatcttgtgcgaccttgtgtggtaag 42459469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 16664180 - 16663988
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 142  Q
    |||||||||||||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||| ||    
T  16664180 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcgcaaaag 16664081  T
Q  143 gaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatgg 235  Q
     |||||  || |  | ||   | |  |||| | | | |||||||||||||| |||||||| ||||||||||||||| | |||||| |||||||    
T  16664080 aaatgtaattgatcccactcttacggcttgcgtgactttgtgtggtaaggaagaggaaagggatcatttgttttttaattgtgatcattatgg 16663988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 52196490 - 52196409
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  52196490 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgcctctttctgaatagacttgctacaaa 52196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 253
Target Start/End: Original strand, 39632858 - 39633060
Alignment:
Q  51 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtcc 150  Q
    |||||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |  || || ||||||     
T  39632858 ttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaaagataatttgcataaaagaaatgtca 39632957  T
Q  151 ttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctctt 250  Q
    || |  | ||   |    |||| ||| | | |||||||||||| |||||||| |||||| |||||||||| |||||  ||||||||||| | ||||||||    
T  39632958 ttgactccactcttatggcttgcgcgacttcgtgtggtaaggaagaggaaagggatcatctgttttttcattgtgaccattatggtcgactttggctctt 39633057  T
Q  251 gat 253  Q
    |||    
T  39633058 gat 39633060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 10754250 - 10754186
Alignment:
Q  60 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    ||||||||||| || || |||||||| |||||||||||||||||| |||||||||||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaa 10754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 10754128 - 10754072
Alignment:
Q  182 gtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcg 238  Q
    |||||||||||| |||||||| |||||| |||||||||  |||||| ||||||||||    
T  10754128 gtgtggtaaggaagaggaaagggatcatctgttttttctttgtgatcattatggtcg 10754072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 58387 - 58624
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  58387 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 58486  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| |||  |||||||||||||||||||||||||||||||||||| || | |||||||    
T  58487 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggaggaaagggaccgtttgttt 58586  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    |||||||||||  |||||||||| ||||||||||||||    
T  58587 tttcaatgtgacaattatggtcggttatggctcttgat 58624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 11266256 - 11266019
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11266256 tggacaacaacatcactgcagagtttggtcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagact 11266157  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||| || |||||||||    
T  11266156 tgctacaaaggacaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 11266057  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  11266056 tttcaatgtgactattatggtcggttatggctcttgat 11266019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 27891923 - 27891692
Alignment:
Q  22 tcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||| ||    
T  27891923 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaac 27891824  T
Q  122 aaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaa 221  Q
    ||||||||| || ||||||||||| |||||||||| | | ||||  ||||| ||||||||||||||||||||||||||||| || |||||||||||||||    
T  27891823 aaaggacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaa 27891724  T
Q  222 tgtgattattatggtcgattatggctcttgat 253  Q
    |||||| |||||||||||||||||||||||||    
T  27891723 tgtgatcattatggtcgattatggctcttgat 27891692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 5824972 - 5825191
Alignment:
Q  28 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  5824972 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 5825071  T
Q  128 caatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgat 227  Q
     |||||||||||||||||||||||  ||||||| |||| || |||||  || || |||||||||||||||||||| |||||||||||||||| |||||||    
T  5825072 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgttttttcgatgtgat 5825171  T
Q  228 tattatggtcgattatggct 247  Q
    ||||||||| | ||||||||    
T  5825172 tattatggtaggttatggct 5825191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 6678580 - 6678798
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||  || |||||||||||| | |||||||||||| |||||||||||||||    
T  6678580 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttagaag--aatatttttgtttggaggctctttctgaatcgacttgctacaaagg 6678677  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    | |||||||||||||||||||||||  ||||||| |||| || |||||  || || | |||||||||||||||||| |||||||||||||||||||||||    
T  6678678 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggaggaaagtgatcatttgttttttcaatgtga 6678777  T
Q  227 ttattatggtcgattatggct 247  Q
    |||||||||||| ||||||||    
T  6678778 ttattatggtcggttatggct 6678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 29150504 - 29150299
Alignment:
Q  47 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaat 146  Q
    ||||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||  | ||||| ||||||    
T  29150504 atttttatggcttaaggcggttccgttaaaggttaatatttttgtttggtgtcttttcctgaatagacttgctacaaaggacaacttgcgcaaaaggaat 29150405  T
Q  147 gtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggc 246  Q
    |||| | ||||||  ||||  |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||  ||||||| || |||||||    
T  29150404 gtcc-tgaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagagaccatttattttttcaatgtgaccattatggccggttatggc 29150306  T
Q  247 tcttgat 253  Q
    |||||||    
T  29150305 tcttgat 29150299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 31962671 - 31962882
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||| ||| ||| |||| ||||||||||||||| |||| |||||| ||||| |||||||| |||||||||| ||||| ||||||||||||||||||||    
T  31962671 aacatctctgaagattttgctcaatttttatggctaaaagtggttccgttaaaggttaacatatttgtttggcatctctatctgaatagacttgctacaa 31962770  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| ||| | ||||  |||||||| ||| |  | ||   ||   | |||||  |||||||||||||||| ||||| || || |||||||||||||| ||    
T  31962771 aggataatttgcgcagaaggaatgttcttgatccgacccttgtggcatgtgcaaccttgtgtggtaaggaagaggatagggaccatttgttttttcattg 31962870  T
Q  224 tgattattatgg 235  Q
    |||| |||||||    
T  31962871 tgatcattatgg 31962882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 10462243 - 10462359
Alignment:
Q  131 tcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattat 230  Q
    |||||||||||||||||||||  ||||||| |||| || |||||  || || ||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  10462243 tcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtagtaaggaggaggaaagggatcatttgtttttccaatgtgattat 10462342  T
Q  231 tatggtcgattatggct 247  Q
    |||||||| ||||||||    
T  10462343 tatggtcggttatggct 10462359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 29322997 - 29322916
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  29322997 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 29322916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 38931973 - 38931892
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | |||||||||||  | || |||||||| |||||||||| |||||||||||||||||||||||||||    
T  38931973 atcaatttttatggttgaaagcggttccgctgaaggttaacatatttgtttggcatctctttctgaatagacttgctacaaa 38931892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 8896447 - 8896369
Alignment:
Q  46 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    ||||||||||| | ||||||||||  || || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  8896447 aatttttatggttgaaagcggttctgttgaaggttaacatagttgtttggcgtctctttctgaatagacttgctacaaa 8896369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 8895451 - 8895378
Alignment:
Q  180 ttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 253  Q
    |||||||||||||| |||||||| |||||| |||||||| | |||||| ||||||| ||| | ||||| |||||    
T  8895451 ttgtgtggtaaggaagaggaaagggatcatatgttttttaattgtgatcattatgggcgactttggcttttgat 8895378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 38931836 - 38931763
Alignment:
Q  180 ttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggctcttgat 253  Q
    |||||||||||||| |||||||| |||| | |||||||| | |||||| ||||||| ||| | ||||| |||||    
T  38931836 ttgtgtggtaaggaagaggaaagggatcgtctgttttttaattgtgatcattatgggcgactttggcttttgat 38931763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 5e-99; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 38938701 - 38938466
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||||||| |||||||  |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38938701 tggacatcagcatcact--agagtttgatcagtttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagact 38938604  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||| |||    
T  38938603 tactacaaaggacaatcttcgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatgtggtaaggaggaggaaagggaccatttattt 38938504  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  38938503 tttcaatgtgattattatggtcgattatgactcttgat 38938466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 30276112 - 30275892
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||    
T  30276112 aacatcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaa 30276013  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||||||||||||||| ||| ||||||| |||| ||||||||  || || ||||||||||||||||||||||||||||||||||| |||||    
T  30276012 aggataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagagatcatttgtttttccaatg 30275913  T
Q  224 tgattattatggtcgattatg 244  Q
    |||||||||||||||||||||    
T  30275912 tgattattatggtcgattatg 30275892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 32350094 - 32349874
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||    
T  32350094 atcactgcagattttgatcaatttttatggcttaaagcgattcccttaaaagttaatatttttgtttcgtggctctttctgaatagacttgctacaaagg 32349995  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    | | |||||||||||||||||| ||| ||||||| |||| ||||||||  || || |||||||||||||||||||| |||||||||||||| ||||| ||    
T  32349994 atattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 32349895  T
Q  227 ttattatggtcgattatggct 247  Q
    |||||||||||||||||||||    
T  32349894 ttattatggtcgattatggct 32349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 23385063 - 23384843
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  23385063 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaaagg 23384964  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    | |||||||||||||||||||||||  ||||||| |||| || |||||  || || |||||||| ||||||||||| ||||||||||| || ||||||||    
T  23384963 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagtgatcatttgttcttccaatgtga 23384864  T
Q  227 ttattatggtcgattatggct 247  Q
    |||||||||| | ||||||||    
T  23384863 ttattatggttggttatggct 23384843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 21963627 - 21963408
Alignment:
Q  28 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21963627 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21963528  T
Q  128 caatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgat 227  Q
     |||||||||||||||||||||||  ||||||| |||| || |||||  || || |||||||||||||||||||  |||||||||||||||| |||||||    
T  21963527 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaaggatcatttgttttttcgatgtgat 21963428  T
Q  228 tattatggtcgattatggct 247  Q
    ||||||||| | ||||||||    
T  21963427 tattatggtaggttatggct 21963408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 21964812 - 21964639
Alignment:
Q  28 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21964812 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21964713  T
Q  128 caatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaa 201  Q
     |||||||||||||||||||||||  ||||||| |||| || |||||  || || |||||||||||||||||||    
T  21964712 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 247
Target Start/End: Original strand, 27914653 - 27914823
Alignment:
Q  77 agttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcg 176  Q
    |||||| ||||||||||| ||  |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||| |||| || || ||      
T  27914653 agttaatatttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggt 27914752  T
Q  177 gccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggct 247  Q
    ||  | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  27914753 gctatatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 27914823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 1258665 - 1258584
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||||||| || || |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  1258665 atcaatttttatggttaaaagcggttccgttgaaggttaacatatttgttttgcgtctctttctgaatagacttgctacaaa 1258584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 22300966 - 22300788
Alignment:
Q  44 tcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagagg 143  Q
    ||||||||||||| | |||| |||||| || || |||||||| |||||  | ||||||||||||||||||| |||||||||||| ||| | ||||| ||     
T  22300966 tcaatttttatggttaaaagtggttccgttgaaggttaacatatttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaaga 22300867  T
Q  144 aatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaat 222  Q
    ||||||||| |  ||||   ||   | || ||| |||||||||||||| | ||||||||||| ||| ||||||||||||    
T  22300866 aatgtccttgaccctacccttgtggcgtgcgcgaccttgtgtggtaagaaagaggaaagagaccatctgttttttcaat 22300788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 74521 - 74292
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74521 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 74422  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    ||||||| ||||||||||||||||||||| |||||||  ||| |||||||| ||||||||||||||||||||||||||  || ||||||||||| |||||    
T  74421 aggacaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatg 74322  T
Q  224 tgattattatggtcgattatggctcttgat 253  Q
    ||||||||||||||  |||||||| |||||    
T  74321 tgattattatggtcagttatggcttttgat 74292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 40891763 - 40891992
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40891763 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 40891862  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    ||||||| ||||||||||||||||||||| |||||||  ||| |||||||| ||||||||||||||||||||||||||  || ||||||||||| |||||    
T  40891863 aggacaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatg 40891962  T
Q  224 tgattattatggtcgattatggctcttgat 253  Q
    ||||||||||||||  |||||||| |||||    
T  40891963 tgattattatggtcagttatggcttttgat 40891992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 587007 - 586784
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  587007 aacatcactgcagagtttgatcgttttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaa 586908  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    ||||||||||||| || |||||||||||| ||||||| |||| |||  ||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  586907 aggacaatcttcgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatgtggtaaggaggaggaaagggatcatttgttttttcaatg 586808  T
Q  224 tgattattatggtcgattatggct 247  Q
    ||||||||||||||||||||||||    
T  586807 tgattattatggtcgattatggct 586784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 37075592 - 37075812
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||| |||| |||||||||||||||    
T  37075592 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaagg 37075691  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    | |||||||||||||||||||||||  ||||||| |||| || |||||  || || ||||| |||||||||||||| |||||||||||||||||||||||    
T  37075692 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggaggaaagggatcatttgttttttcaatgtga 37075791  T
Q  227 ttattatggtcgattatggct 247  Q
    |||||||||||| ||||||||    
T  37075792 ttattatggtcggttatggct 37075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 12121809 - 12121586
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  12121809 aacatcactgcaaattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaa 12121710  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||||||||||||||| ||  ||| ||| |||| ||||||||  || || |||||||||||||||||||  |||||||||||||| |||||    
T  12121709 aggataatcttcgcaagaggaatgttctagaggataccaatgtttcttgtggtgctttatgtggtaaggaggaggaaatggatcatttgtttttccaatg 12121610  T
Q  224 tgattattatggtcgattatggct 247  Q
     |||||||||||||||||||||||    
T  12121609 cgattattatggtcgattatggct 12121586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 24819920 - 24819697
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||    
T  24819920 aacatcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaa 24819821  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||| |||||||| |||||| ||||||| || | ||||||||  || || |||||||||||||||||||| |||||||||||||| |||||    
T  24819820 aggataatcttcgtaagaggaacgtccttgaggctaccaacgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 24819721  T
Q  224 tgattattatggtcgattatggct 247  Q
     || ||||||||||| ||||||||    
T  24819720 cgactattatggtcgtttatggct 24819697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 39 - 247
Target Start/End: Original strand, 36575396 - 36575604
Alignment:
Q  39 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgca 138  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| |||||||| |    
T  36575396 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 36575495  T
Q  139 agaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcg 238  Q
    |||||||||||||| ||||||| |||| ||||||||  ||  | |||||||||||||||||||| |||||||||||||| ||||| || | |||||||||    
T  36575496 agaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgacttttatggtcg 36575595  T
Q  239 attatggct 247  Q
     ||||||||    
T  36575596 tttatggct 36575604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 9403134 - 9403347
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||         |||||| |||||||||||||||    
T  9403134 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggac-------ctgaatcgacttgctacaaagg 9403226  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    | |||||||||||||||||||||||  ||||||| |||| || |||||  || || |||||||||||||||||||| |||||||||||||| ||||||||    
T  9403227 ataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtga 9403326  T
Q  227 ttattatggtcgattatggct 247  Q
    |||||||||||| ||||||||    
T  9403327 ttattatggtcggttatggct 9403347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 34982067 - 34981847
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    |||| ||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||||||| | |||||||||||| | |||||||||||||    
T  34982067 atcaatgcagagtttgatcagtttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaaagg 34981968  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtga 226  Q
    | |||||||||||||||||||||||  ||||||| || | ||  ||||  || || ||||||||||||||||||||||| ||||| || |||||||||||    
T  34981967 ataatcttcgcaagaggaatgtcctcgaggctaccaacgttttctgtggtgctttatgtggtaaggaggaggaaagagaccatttattctttcaatgtga 34981868  T
Q  227 ttattatggtcgattatggct 247  Q
    |||||||||||| ||||||||    
T  34981867 ttattatggtcggttatggct 34981847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 20705483 - 20705720
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| |||| |||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||    
T  20705483 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20705582  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||| |||||||| ||||| |||||||| || || ||| ||| | | ||||   |||||||||| |||||||||||||||||||||||||| |||||||||    
T  20705583 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgttt 20705682  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    || ||||||||| ||||||| || |||||||| |||||    
T  20705683 ttccaatgtgatcattatggccggttatggcttttgat 20705720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 20873527 - 20873764
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| |||| |||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||    
T  20873527 tggacttcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagact 20873626  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||| |||||||| ||||| |||||||| || || ||| ||| | | ||||   |||||||||| |||||||||||||||||||||||||| |||||||||    
T  20873627 tgcaacaaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgttt 20873726  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    || ||||||||| ||||||| || |||||||| |||||    
T  20873727 ttccaatgtgatcattatggccggttatggcttttgat 20873764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 27869099 - 27868912
Alignment:
Q  48 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatg 147  Q
    ||||||||||| |||||||||   ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||  |||||||    
T  27869099 tttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaaggataatttgcgcagaaggaatg 27869000  T
Q  148 tccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatgg 235  Q
    |  || |  | ||   ||   | |||||| |||||||||||||||| ||||| |  || |||||||||||||| |||||| |||||||    
T  27868999 ttattgatccgacccttgtggcatgtgcgaccttgtgtggtaaggaagaggatatggaccatttgttttttcattgtgatcattatgg 27868912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 27987585 - 27987675
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatct 133  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  27987585 atcattttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaaggataatct 27987675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 22865766 - 22865847
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22865766 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 22865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 47549050 - 47548969
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47549050 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 47553493 - 47553412
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47553493 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 18815411 - 18815516
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 142  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| |||||  | |||||    
T  18815411 atcattttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatctgaggaagag 18815510  T
Q  143 gaatgt 148  Q
    ||||||    
T  18815511 gaatgt 18815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 8457213 - 8457307
Alignment:
Q  54 tggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgt 148  Q
    |||| |||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||  |||| || ||||| |||||    
T  8457213 tggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaaggattatctgcggaagagaaatgt 8457307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 45649316 - 45649371
Alignment:
Q  180 ttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatgg 235  Q
    |||||||||||||| |||||||| ||||| ||||||||| | |||||| |||||||    
T  45649316 ttgtgtggtaaggaagaggaaagggatcacttgttttttaattgtgatcattatgg 45649371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 5196834 - 5196753
Alignment:
Q  46 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 127  Q
    ||||||| |||||||| ||| || | |||||||| || || ||| | || || |||||||| ||||||||||||||||||||    
T  5196834 aatttttgtggcttaaggcgatttcgttaaaagtgaatatctttatctgacgactctttctaaatagacttgctacaaagga 5196753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 26077725 - 26077948
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  26077725 aacatcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaa 26077824  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||||||||||||||| |||||||| ||| ||||||| |||| ||||||||  || || |||||||||||||||||||| |||||||||||||| |||||    
T  26077825 aggacaatcttcgcaaaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 26077924  T
Q  224 tgattattatggtcgattatggct 247  Q
     || ||||||||||| ||||||||    
T  26077925 cgaatattatggtcgcttatggct 26077948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 31423238 - 31423431
Alignment:
Q  22 tcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||    
T  31423238 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaac 31423337  T
Q  122 aaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    |||| |||| |||||||||||||| |||||| | | ||| |||| |||||| ||||||||||||||||||||||||||||| || |||||||||    
T  31423338 aaagaacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 43 - 253
Target Start/End: Complemental strand, 29532561 - 29532351
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 142  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  |||| ||    
T  29532561 atcaatttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaag 29532462  T
Q  143 gaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgatta 242  Q
    |||||||||||  ||||  |||   ||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||| ||| |||||| |||| |     
T  29532461 gaatgtccttccagctaataatatatcttgtgtggccttgtgtgataaggaggaggaaagggatcatttgttctttcaatgcgatcattatgatcgactt 29532362  T
Q  243 tggctcttgat 253  Q
    |||||||||||    
T  29532361 tggctcttgat 29532351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 239
Target Start/End: Original strand, 26390260 - 26390456
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 142  Q
    ||||||||||||||||||  ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |  |||  ||    
T  26390260 atcaatttttatggcttacggcggtaccattaaaggttaacatttttgtctggcgtctctttctgaatagacttgctacaacggacaatttaagcataag 26390359  T
Q  143 gaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcga 239  Q
    ||||||||||| |||||  |||   |||| |  ||||||||||||||||||||| ||||| |  |||||||| |||||||| ||| |||||||||||    
T  26390360 gaatgtccttccggctaataatatgtcttatatggccttgtgtggtaaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtcga 26390456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 10801698 - 10801779
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10801698 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 10801779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 2959748 - 2959812
Alignment:
Q  183 tgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgattatggct 247  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||||||    
T  2959748 tgtggtaaggaggaggacagagaccatttattctttcaatgtgattattatggtcggttatggct 2959812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 18295395 - 18295618
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  18295395 aacatcactgcatattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaa 18295494  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||||||||||||||| ||  ||| ||| |||| ||||||||  || || |||||||||||||||||||| |||||||||||||| |||||    
T  18295495 aggataatcttcgcaagaggaatgttctagaggttaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 18295594  T
Q  224 tgattattatggtcgattatggct 247  Q
     |||||||||||||||||||||||    
T  18295595 cgattattatggtcgattatggct 18295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 667496 - 667283
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  667496 tggacatcaacatcactgcagagtttaatcaatttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagact 667397  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||||||||          ||||||||||||||||| ||  ||||||||    
T  667396 tgctacaaaggacaaccttcgcaagaggaatgtacttgaggctacaaatgtttcttgtgc----------ggtaaggaggaggaaagggactatttgttt 667307  T
Q  216 tttcaatgtgattattatggtcga 239  Q
    ||||||||||| ||||||||||||    
T  667306 tttcaatgtgactattatggtcga 667283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 28604878 - 28605115
Alignment:
Q  16 tggacatcaacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagact 115  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  28604878 tggacttcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagact 28604977  T
Q  116 tgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttt 215  Q
    ||| ||||||||||| || || |||||||| || ||| ||| | | ||||  ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  28604978 tgcaacaaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagagaccatttgttt 28605077  T
Q  216 tttcaatgtgattattatggtcgattatggctcttgat 253  Q
    || ||||||||| |||||||||| ||||||||||||||    
T  28605078 ttccaatgtgatcattatggtcggttatggctcttgat 28605115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 2894460 - 2894237
Alignment:
Q  24 aacatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 123  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||    
T  2894460 aacatcactgcagattttgatcaatttctatggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaa 2894361  T
Q  124 aggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatg 223  Q
    |||| |||||||| ||||||||| ||||| |||| || |||| ||||||||  || || |||||||| |||||||| |  |||||||||||||| |||||    
T  2894360 aggataatcttcgtaagaggaatatccttgaggcaaccaatgtttcttgtggtgctttatgtggtaacgaggaggacatggatcatttgtttttccaatg 2894261  T
Q  224 tgattattatggtcgattatggct 247  Q
      | ||||||||||| ||||||||    
T  2894260 caactattatggtcgtttatggct 2894237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 7218368 - 7218576
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 142  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | || || ||    
T  7218368 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaag 7218467  T
Q  143 gaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgatta 242  Q
    ||||||| || ||||||  ||||  | |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||| ||  | |||    
T  7218468 gaatgtctttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgatcattacgggtggtta 7218567  T
Q  243 tggctcttg 251  Q
    |||||||||    
T  7218568 tggctcttg 7218576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 17228156 - 17227966
Alignment:
Q  27 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 126  Q
    ||||||| ||||||| |||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||    
T  17228156 atcactgaagagtttcatcattttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaagg 17228057  T
Q  127 acaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttt 217  Q
    ||||| | ||||| |||||||||||| | | | ||  ||   |||| ||||||||||||||| |||  ||||| || || |||||||||||    
T  17228056 acaatttgcgcaaaaggaatgtccttgatgtttcacttgtgacttgcgcggccttgtgtggtgaggtagaggacagggaccatttgttttt 17227966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 9759578 - 9759701
Alignment:
Q  100 tctttctgaatagacttgctacaaaggacaatcttcgcaagaggaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggagga 199  Q
    |||||| ||||||||||||||||||||| ||||| ||||| ||||||||| || |||| ||   ||  | ||||||||| ||| ||||||||||||| ||    
T  9759578 tctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtctttgaggccacttttgtgtattgtgcggctttgcgtggtaaggaggatga 9759677  T
Q  200 aagagatcatttgttttttcaatg 223  Q
    ||| || ||| |||||||||||||    
T  9759678 aagggaccatctgttttttcaatg 9759701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 5391535 - 5391616
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 124  Q
    |||||||||||||| | ||||||| ||| || || ||||||||||||||||||||  | ||||||||||||||||| |||||    
T  5391535 atcaatttttatggttgaaagcggctccgttgaaggttaacatttttgtttggcgcttatttctgaatagacttgcaacaaa 5391616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 251
Target Start/End: Original strand, 224744 - 224952
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 142  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || || ||    
T  224744 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaag 224843  T
Q  143 gaatgtccttcaggctacaaatgcttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcgatta 242  Q
    |||||||||| ||||||  ||||  | |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||  | |||    
T  224844 gaatgtccttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgatcattatgggtggtta 224943  T
Q  243 tggctcttg 251  Q
    |||||||||    
T  224944 tggctcttg 224952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 11269 - 11164
Alignment:
Q  43 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaatcttcgcaagag 142  Q
    |||| ||||| ||||  |||| |||||| ||||| ||||| || ||||| ||  ||||||| |||||||||||| |||||||||| ||||| || |||||    
T  11269 atcattttttgtggcacaaagaggttccgttaaaggttaatatatttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagag 11170  T
Q  143 gaatgt 148  Q
     |||||    
T  11169 aaatgt 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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