View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_1D_high_2 (Length: 564)
Name: NF0438_1D_high_2
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 23333299 - 23333847
Alignment:
| Q |
1 |
tggtgctcagcttaattttaatggtcaagatagaaagactccataagaaaaaatacggcagtccaaaaagaatccaccacactggttgcaaatttgttat |
100 |
Q |
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| T |
23333299 |
tggtgctcagcttaattttaatggtcaagacagaaagactccataagaaaaaatacagcagtccaaaaagaatccaccacactggttgcaaatttgttat |
23333398 |
T |
|
| Q |
101 |
actttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccctgtcgtgcgcatcttcgtaatgacgacattaag |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23333399 |
accttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccccatcgtgcgcatcttcgtaatgacgacattaag |
23333498 |
T |
|
| Q |
201 |
caagccaacgaaatcatttgaattagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23333499 |
caagccaacgaaatcatttgaattagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatcac |
23333598 |
T |
|
| Q |
301 |
ttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23333599 |
ttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaac |
23333698 |
T |
|
| Q |
401 |
gacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23333699 |
gacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgc |
23333798 |
T |
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| Q |
501 |
ttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc |
549 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
23333799 |
ttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
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