View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_1D_high_5 (Length: 417)

Name: NF0438_1D_high_5
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_1D_high_5
NF0438_1D_high_5
[»] chr5 (34 HSPs)
chr5 (24-417)||(38816546-38816932)
chr5 (159-234)||(19820428-19820503)
chr5 (159-226)||(22013364-22013431)
chr5 (159-233)||(42469171-42469245)
chr5 (185-314)||(22423764-22423895)
chr5 (184-233)||(15410483-15410532)
chr5 (181-233)||(6326332-6326384)
chr5 (174-232)||(15382442-15382500)
chr5 (198-231)||(6035472-6035505)
chr5 (181-234)||(21191090-21191143)
chr5 (159-226)||(2436878-2436939)
chr5 (198-234)||(3966492-3966528)
chr5 (198-234)||(17123037-17123073)
chr5 (181-225)||(21522722-21522766)
chr5 (181-225)||(21533288-21533332)
chr5 (198-234)||(27144452-27144488)
chr5 (159-234)||(6247572-6247647)
chr5 (191-234)||(14674251-14674294)
chr5 (191-234)||(19579683-19579726)
chr5 (174-233)||(21137654-21137713)
chr5 (191-234)||(34879332-34879375)
chr5 (191-233)||(5873548-5873590)
chr5 (198-236)||(11685928-11685966)
chr5 (203-233)||(27932229-27932259)
chr5 (200-234)||(28588708-28588742)
chr5 (337-375)||(35665559-35665597)
chr5 (181-227)||(36642803-36642849)
chr5 (157-276)||(37328835-37328955)
chr5 (185-234)||(19552577-19552626)
chr5 (159-232)||(30135264-30135336)
chr5 (207-236)||(32766975-32767004)
chr5 (174-234)||(13287433-13287493)
chr5 (288-316)||(24906250-24906278)
chr5 (198-234)||(31084312-31084348)
[»] chr7 (34 HSPs)
chr7 (159-233)||(27944991-27945065)
chr7 (159-233)||(24105629-24105702)
chr7 (181-234)||(11722132-11722185)
chr7 (184-265)||(19206025-19206107)
chr7 (202-276)||(29787362-29787435)
chr7 (198-276)||(32308109-32308188)
chr7 (174-234)||(1433419-1433479)
chr7 (159-230)||(2034392-2034462)
chr7 (183-234)||(2425767-2425818)
chr7 (154-233)||(7328726-7328805)
chr7 (172-276)||(24339605-24339710)
chr7 (159-234)||(43027503-43027578)
chr7 (174-233)||(43249958-43250017)
chr7 (192-234)||(8046061-8046103)
chr7 (198-265)||(22484014-22484082)
chr7 (192-234)||(23191879-23191921)
chr7 (184-234)||(26733279-26733329)
chr7 (201-274)||(11072290-11072362)
chr7 (203-276)||(30731031-30731103)
chr7 (183-232)||(49107795-49107844)
chr7 (198-234)||(20549780-20549816)
chr7 (195-234)||(2948669-2948708)
chr7 (191-234)||(21828439-21828482)
chr7 (202-233)||(28155563-28155594)
chr7 (160-234)||(598160-598233)
chr7 (183-233)||(5235960-5236010)
chr7 (192-234)||(20545270-20545312)
chr7 (174-232)||(26329418-26329476)
chr7 (183-232)||(4017830-4017879)
chr7 (198-231)||(6630949-6630982)
chr7 (198-231)||(25791642-25791675)
chr7 (182-234)||(11061110-11061162)
chr7 (174-234)||(17851396-17851456)
chr7 (198-234)||(22868031-22868067)
[»] chr6 (40 HSPs)
chr6 (174-234)||(9027143-9027203)
chr6 (181-276)||(10294079-10294175)
chr6 (159-234)||(853893-853968)
chr6 (174-234)||(5000660-5000720)
chr6 (159-227)||(8365560-8365628)
chr6 (161-233)||(12696277-12696348)
chr6 (183-234)||(9629357-9629408)
chr6 (159-234)||(30866178-30866253)
chr6 (159-233)||(6389693-6389767)
chr6 (184-234)||(9658854-9658904)
chr6 (196-234)||(19040339-19040377)
chr6 (174-276)||(16766662-16766765)
chr6 (159-227)||(3398569-3398637)
chr6 (174-234)||(5732544-5732604)
chr6 (174-234)||(7938081-7938141)
chr6 (174-234)||(9107404-9107464)
chr6 (185-233)||(13851712-13851760)
chr6 (174-233)||(7977865-7977924)
chr6 (191-234)||(20371144-20371187)
chr6 (181-234)||(426548-426601)
chr6 (193-234)||(7265627-7265668)
chr6 (174-276)||(34073338-34073441)
chr6 (182-234)||(8777007-8777059)
chr6 (174-234)||(34595099-34595159)
chr6 (191-234)||(17841623-17841666)
chr6 (182-265)||(31579229-31579311)
chr6 (159-233)||(25038106-25038180)
chr6 (160-234)||(31959111-31959184)
chr6 (201-234)||(10842524-10842557)
chr6 (198-234)||(677826-677862)
chr6 (159-232)||(4877890-4877965)
chr6 (158-234)||(7930254-7930330)
chr6 (198-234)||(7996412-7996448)
chr6 (198-234)||(8022353-8022389)
chr6 (198-234)||(10339160-10339196)
chr6 (182-234)||(16833281-16833333)
chr6 (198-234)||(17341698-17341734)
chr6 (201-233)||(21395342-21395374)
chr6 (198-234)||(21424836-21424872)
chr6 (288-316)||(34073276-34073304)
[»] chr2 (27 HSPs)
chr2 (159-270)||(21782817-21782927)
chr2 (159-223)||(33519736-33519800)
chr2 (159-234)||(20539708-20539783)
chr2 (174-265)||(4332891-4332981)
chr2 (184-234)||(21616737-21616787)
chr2 (159-232)||(19536434-19536507)
chr2 (158-231)||(23717976-23718048)
chr2 (158-231)||(24105648-24105720)
chr2 (207-265)||(1327976-1328033)
chr2 (174-259)||(18276486-18276570)
chr2 (160-225)||(21624217-21624282)
chr2 (184-265)||(36409631-36409711)
chr2 (199-234)||(37411278-37411313)
chr2 (160-234)||(38117193-38117261)
chr2 (158-232)||(14996260-14996333)
chr2 (196-234)||(18420468-18420506)
chr2 (158-233)||(21374734-21374810)
chr2 (174-264)||(28412315-28412404)
chr2 (176-234)||(31018557-31018615)
chr2 (209-276)||(44860320-44860388)
chr2 (172-233)||(4142875-4142936)
chr2 (192-233)||(21091706-21091747)
chr2 (198-234)||(896200-896236)
chr2 (185-233)||(10535794-10535842)
chr2 (182-234)||(30404884-30404936)
chr2 (202-234)||(31284041-31284073)
chr2 (201-233)||(42832311-42832343)
[»] scaffold0306 (1 HSPs)
scaffold0306 (158-234)||(13349-13425)
[»] scaffold0152 (1 HSPs)
scaffold0152 (158-234)||(21902-21978)
[»] chr8 (21 HSPs)
chr8 (159-227)||(25192388-25192456)
chr8 (181-276)||(22651948-22652044)
chr8 (176-276)||(29510295-29510396)
chr8 (168-234)||(926822-926888)
chr8 (181-234)||(27213519-27213572)
chr8 (159-227)||(126390-126457)
chr8 (159-234)||(13436998-13437073)
chr8 (191-234)||(31109552-31109595)
chr8 (172-234)||(24362236-24362298)
chr8 (201-234)||(39954313-39954346)
chr8 (194-234)||(31236611-31236651)
chr8 (191-267)||(37283812-37283887)
chr8 (159-234)||(4298920-4298994)
chr8 (159-234)||(11944615-11944690)
chr8 (172-234)||(4673459-4673521)
chr8 (200-234)||(27101506-27101540)
chr8 (192-234)||(34897068-34897110)
chr8 (201-234)||(13844630-13844663)
chr8 (174-234)||(2572090-2572150)
chr8 (159-276)||(11927077-11927195)
chr8 (182-234)||(20873042-20873094)
[»] chr1 (35 HSPs)
chr1 (182-234)||(6427323-6427375)
chr1 (174-234)||(40917716-40917776)
chr1 (175-234)||(398799-398858)
chr1 (182-234)||(2896155-2896207)
chr1 (158-233)||(5376535-5376609)
chr1 (159-234)||(5927374-5927449)
chr1 (167-234)||(10572623-10572690)
chr1 (190-234)||(12443494-12443538)
chr1 (198-234)||(17831565-17831601)
chr1 (198-234)||(36878450-36878486)
chr1 (181-273)||(1486703-1486796)
chr1 (174-274)||(38503285-38503386)
chr1 (172-227)||(48040503-48040558)
chr1 (181-259)||(1262856-1262933)
chr1 (184-234)||(9709795-9709845)
chr1 (184-234)||(34298411-34298461)
chr1 (159-233)||(39130802-39130876)
chr1 (198-234)||(19562655-19562691)
chr1 (198-233)||(609493-609528)
chr1 (191-234)||(6415035-6415078)
chr1 (159-234)||(31014993-31015068)
chr1 (191-234)||(46348417-46348460)
chr1 (182-233)||(48450622-48450673)
chr1 (198-232)||(3490426-3490460)
chr1 (200-234)||(10475011-10475045)
chr1 (168-234)||(15641064-15641130)
chr1 (198-236)||(40285686-40285724)
chr1 (181-234)||(20157384-20157437)
chr1 (201-234)||(21530681-21530714)
chr1 (204-233)||(41877505-41877534)
chr1 (261-314)||(48547938-48547991)
chr1 (174-234)||(10577769-10577829)
chr1 (191-227)||(18556497-18556533)
chr1 (201-265)||(25452152-25452215)
chr1 (159-219)||(34315663-34315722)
[»] scaffold0223 (1 HSPs)
scaffold0223 (159-234)||(20122-20197)
[»] chr3 (35 HSPs)
chr3 (159-234)||(8383207-8383282)
chr3 (172-271)||(5441029-5441128)
chr3 (174-233)||(24205076-24205135)
chr3 (159-225)||(8842280-8842346)
chr3 (190-255)||(5407261-5407325)
chr3 (174-234)||(28917966-28918026)
chr3 (174-233)||(4991002-4991061)
chr3 (168-227)||(10335327-10335386)
chr3 (159-234)||(55401025-55401100)
chr3 (160-234)||(8587055-8587129)
chr3 (183-233)||(9800014-9800064)
chr3 (160-234)||(32429414-32429488)
chr3 (182-234)||(2620087-2620139)
chr3 (195-276)||(8039826-8039908)
chr3 (174-234)||(15796328-15796388)
chr3 (182-234)||(26492239-26492291)
chr3 (191-230)||(21720746-21720785)
chr3 (159-234)||(25064859-25064934)
chr3 (184-234)||(12674535-12674585)
chr3 (158-232)||(14223889-14223962)
chr3 (191-232)||(3865592-3865633)
chr3 (191-232)||(12703989-12704030)
chr3 (202-255)||(34307794-34307846)
chr3 (174-234)||(3164059-3164119)
chr3 (198-234)||(4987325-4987361)
chr3 (288-316)||(5440965-5440993)
chr3 (198-234)||(6525714-6525750)
chr3 (191-227)||(10318075-10318111)
chr3 (160-232)||(14618732-14618804)
chr3 (190-234)||(14832080-14832124)
chr3 (198-234)||(21479107-21479143)
chr3 (201-233)||(25074781-25074813)
chr3 (198-234)||(26290360-26290396)
chr3 (182-234)||(26508083-26508135)
chr3 (198-234)||(40052321-40052357)
[»] scaffold0053 (1 HSPs)
scaffold0053 (174-234)||(8763-8823)
[»] scaffold0007 (1 HSPs)
scaffold0007 (174-233)||(225303-225362)
[»] scaffold0004 (1 HSPs)
scaffold0004 (192-233)||(92790-92831)
[»] scaffold0018 (2 HSPs)
scaffold0018 (162-234)||(178853-178925)
scaffold0018 (192-233)||(192284-192325)
[»] scaffold0003 (1 HSPs)
scaffold0003 (174-226)||(241559-241611)
[»] chr4 (19 HSPs)
chr4 (174-234)||(23293020-23293080)
chr4 (198-233)||(35723420-35723455)
chr4 (198-232)||(17345451-17345485)
chr4 (176-233)||(847918-847975)
chr4 (181-234)||(36635296-36635349)
chr4 (174-233)||(24343472-24343531)
chr4 (191-233)||(7012048-7012090)
chr4 (153-234)||(7670625-7670709)
chr4 (184-234)||(20521883-20521933)
chr4 (174-232)||(20633450-20633508)
chr4 (200-234)||(40613441-40613475)
chr4 (163-232)||(28084475-28084544)
chr4 (191-232)||(30298928-30298969)
chr4 (191-232)||(30327796-30327837)
chr4 (176-276)||(30982869-30982967)
chr4 (202-234)||(1747205-1747237)
chr4 (159-234)||(5775392-5775469)
chr4 (191-234)||(16184801-16184842)
chr4 (159-227)||(28720827-28720894)
[»] scaffold0652 (1 HSPs)
scaffold0652 (174-234)||(496-556)
[»] scaffold0279 (1 HSPs)
scaffold0279 (159-235)||(17903-17979)
[»] scaffold0475 (1 HSPs)
scaffold0475 (174-233)||(3281-3340)
[»] scaffold0103 (1 HSPs)
scaffold0103 (191-234)||(51793-51836)
[»] scaffold0168 (1 HSPs)
scaffold0168 (168-234)||(21002-21068)
[»] scaffold0697 (1 HSPs)
scaffold0697 (201-234)||(1636-1669)
[»] scaffold0110 (1 HSPs)
scaffold0110 (189-271)||(28830-28913)
[»] scaffold0044 (1 HSPs)
scaffold0044 (199-276)||(53170-53248)
[»] scaffold0027 (1 HSPs)
scaffold0027 (182-234)||(46655-46707)


Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 24 - 417
Target Start/End: Complemental strand, 38816932 - 38816546
Alignment:
Q  24 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgcttgaattgaagcaataat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38816932 caacagagagtcgctgcaggttaaaaatagttgggttttacaattcaattaatgtaatatggtatattgtttgtatcattgtttgaattgaagcaataat 38816833  T
Q  124 ttgagaaaatagaataattgaacggtaaccatatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||    
T  38816832 ttgagaaaatagaataattgaacggtaaccatatactatgaagcactaatacggactccg-------cacggatactgacacgccgacaccgctaataat 38816740  T
Q  224 ttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgtaggagatggcgaattcgaggagtgtccgtgcttcatagttatattcg 323  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  38816739 ttgagaaaatcgctatatttcagtataattatgtgtcggtgtggtgtcggtgtcggacatggctaattcgaggagtgtccgtgattcatagttatattcg 38816640  T
Q  324 tgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggagatattta 417  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816639 tgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggagatattta 38816546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 19820503 - 19820428
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  19820503 ctatgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataatttgagaaaatc 19820428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 22013364 - 22013431
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttg 226  Q
    |||||||||||| |||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||    
T  22013364 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttg 22013431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 42469171 - 42469245
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||||||| | |||||| ||| ||||| |||||||| |||||||||||||| | |||||||||||||||||    
T  42469171 ctatgaagcacggacacggacaccgaacacgacacggataatgacacgccgacacggataataatttgagaaaat 42469245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 314
Target Start/End: Complemental strand, 22423895 - 22423764
Alignment:
Q  185 acacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgt-aggag 281  Q
    ||||| ||||||||||||||| | |||||  ||||||||||||||||||| | ||| |||| ||||||  ||| ||||||||| ||||||||||  |||     
T  22423895 acacgacacggatactgacaccctgacactactaataatttgagaaaatcac-ataattcaatataattatatatgtcggtgtcgtgtcggtgtctggac 22423797  T
Q  282 atggcgaattcgaggagtgtccgtgcttcatag 314  Q
    | | | ||| |||||||||||||||||||||||    
T  22423796 acgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 15410532 - 15410483
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  15410532 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaat 15410483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 6326384 - 6326332
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||    
T  6326384 ccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaat 6326332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 15382442 - 15382500
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||| ||||||||| |||||| | |||||||||||||| ||||||||||||| ||||    
T  15382442 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaa 15382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 6035472 - 6035505
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaa 231  Q
    ||||||||||||||||||||||||||||||||||    
T  6035472 actgacacgccgacaccgctaataatttgagaaa 6035505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 21191143 - 21191090
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||| |||||| ||||||| |||||||| ||||||||||||| ||||||    
T  21191143 ccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatc 21191090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 2436878 - 2436939
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttg 226  Q
    |||||||||||| |||||||| ||||||||| |||      |||||||||||||||||||||||||||    
T  2436878 ctatgaagcacggatacggacaccggacacgacac------tgacacgccgacaccgctaataatttg 2436939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 3966492 - 3966528
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3966492 actgacatgccgacaccgctaataatttgagaaaatc 3966528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 17123037 - 17123073
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17123037 actgacacgccaacaccgctaataatttgagaaaatc 17123073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 21522722 - 21522766
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataattt 225  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  21522722 ccggacacgacacggacactgacacgccgacacagctaataattt 21522766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 21533288 - 21533332
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataattt 225  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  21533288 ccggacacgacacggacactgacacgccgacacagctaataattt 21533332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 27144452 - 27144488
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||||||||||||||||| |||||    
T  27144452 actgacacgccgacaccgctaataatttgaggaaatc 27144488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 6247572 - 6247647
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| |||| || ||||| |||||||||  ||| | ||||||||||||||||  |||||||||||| ||||||    
T  6247572 ctatgaaacacggatgcggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatc 6247647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 14674251 - 14674294
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  14674251 cacggacactgacacgccgacacagctaataatttgaaaaaatc 14674294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 19579683 - 19579726
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||| |||||||||| ||||||||||||||||||||    
T  19579683 cacggacactgatacgccgacacagctaataatttgagaaaatc 19579726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 21137654 - 21137713
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| ||||||||  |||||| ||||||||||||||| || ||||||| |||||||||    
T  21137654 acggacaccggacacaacacggacactgacacgccgacatcggtaataatctgagaaaat 21137713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 34879332 - 34879375
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||    
T  34879332 cacggatacggacacgccggcaccgctaaaaatttgagaaaatc 34879375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 5873590 - 5873548
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||    
T  5873590 cacggacactgacatgccgacacctctaataatttgagaaaat 5873548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 11685928 - 11685966
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatcgc 236  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  11685928 actgacatgccgacaccgctaataatttgagaaagtcgc 11685966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 233
Target Start/End: Original strand, 27932229 - 27932259
Alignment:
Q  203 cacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||||||||||||||||||||||||||    
T  27932229 cacgccgacaccgctaataatttgagaaaat 27932259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 28588742 - 28588708
Alignment:
Q  200 tgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| ||||||||||||||||||    
T  28588742 tgacacgccgacaccggtaataatttgagaaaatc 28588708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
Q  337 tgttggagactgacatctgttggacactggacacacctt 375  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35665597 tgttggaaactgacatgtgttggacactggacacacctt 35665559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 36642849 - 36642803
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||||||| |||||| |||||||||||||||| | |||||||||||    
T  36642849 ccggacacgacacggacactgacacgccgacacagttaataatttga 36642803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 37328955 - 37328835
Alignment:
Q  157 tactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--a 254  Q
    |||||||||||||| | |||||| ||| ||||| |||||| ||||| || ||||||| || |||||||||  |||||| | | | |||| | |||||  |    
T  37328955 tactatgaagcacggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcac-aaaattcagtgtaattaca 37328857  T
Q  255 tgtgtcggtgtggtgtcggtgt 276  Q
    ||||||||||| ||||||||||    
T  37328856 tgtgtcggtgtcgtgtcggtgt 37328835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 19552626 - 19552577
Alignment:
Q  185 acacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||| |||||| |||||||||||||||| | ||||||||||| ||||||    
T  19552626 acacgacacggacactgacacgccgacacagttaataatttgaaaaaatc 19552577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 30135264 - 30135336
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||||||||  |||||||| | ||||||| ||| ||||| |||||||||||||  |||||||||||| ||||    
T  30135264 ctatgaagcacatatacggacac-ggacacgacacagataccgacacgccgacacaactaataatttgaaaaaa 30135336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Complemental strand, 32767004 - 32766975
Alignment:
Q  207 ccgacaccgctaataatttgagaaaatcgc 236  Q
    ||||||||||||||||||||||||||||||    
T  32767004 ccgacaccgctaataatttgagaaaatcgc 32766975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 13287493 - 13287433
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| ||| ||||| |||||| | ||||||||||| ||||||    
T  13287493 acggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatc 13287433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 316
Target Start/End: Complemental strand, 24906278 - 24906250
Alignment:
Q  288 aattcgaggagtgtccgtgcttcatagtt 316  Q
    |||||||||||||||||||||||||||||    
T  24906278 aattcgaggagtgtccgtgcttcatagtt 24906250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 31084312 - 31084348
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  31084312 actgacacgccgacacagctaataatttgaaaaaatc 31084348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 27944991 - 27945065
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||||||| |||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  27944991 ctatgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 24105629 - 24105702
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||||||| ||||||| | |||||||| |||||| |||||||||||||||| ||||||||||||| |||||    
T  24105629 ctatgaagcacggatacgga-tacggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 24105702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 11722185 - 11722132
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||    
T  11722185 ccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatc 11722132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 19206025 - 19206107
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 265  Q
    |||||| |||||| ||  ||||||||||||||||||||||||||||||||| | ||| |||||||||||  |||||||||||||    
T  19206025 gacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcac-ataattcattataattatatgtgtcggtgt 19206107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 29787435 - 29787362
Alignment:
Q  202 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgt 276  Q
    ||||||||||||||||||||||||||||||||| | ||| |||| | ||||||||||| |||||  |||||||||    
T  29787435 acacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattatgtgttggtgtaatgtcggtgt 29787362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 32308109 - 32308188
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgt 276  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||| | ||||  |||||||| |||| ||||||||||    
T  32308109 actgacacgccgacaccgctaataatttgagaaaatcac-ataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgt 32308188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 1433419 - 1433479
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||| ||||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  1433419 acggacaccgaacacgacacggacattgacacgccgacaccgttaataatttgagaaaatc 1433479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 2034392 - 2034462
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||||||||| ||||||| | | |||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  2034392 ctatgaagcacggatacgga-tactgacacgacacggatacttacacgtcgacaccactaataatttgagaa 2034462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 2425818 - 2425767
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||    
T  2425818 ggacacgacacagatactgacacgccggcaccgttaataatttgagaaaatc 2425767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 7328805 - 7328726
Alignment:
Q  154 atatactatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||||||||||||| |||||||| ||| ||||| ||| || | | ||||| ||| || |||||||||||||||||||    
T  7328805 atatactatgaagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaat 7328726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 276
Target Start/End: Original strand, 24339605 - 24339710
Alignment:
Q  172 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtg 269  Q
    |||||||| ||||||||| || ||| | |||||||||||||| ||||||||||||| |||||| | ||| |||| | |||||  | |||||||||| |||    
T  24339605 atacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtg 24339703  T
Q  270 tcggtgt 276  Q
    |||||||    
T  24339704 tcggtgt 24339710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 43027578 - 43027503
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||| || ||||| | ||||||| |||||| ||||||||| |||| | ||||||||||||| ||||||    
T  43027578 ctatgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatc 43027503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 43249958 - 43250017
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| ||||||| | |||||| |||||||||||||||| | |||||||||||||||||    
T  43249958 acggacaccggacaagacacggacactgacacgccgacacggataataatttgagaaaat 43250017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 8046103 - 8046061
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  8046103 acggatactgacacgccaacaccactaataatttgagaaaatc 8046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 22484014 - 22484082
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgt 265  Q
    |||||||||||||||||||||||||||| ||||||| || ||| |||| ||||||  |||||||||||||    
T  22484014 actgacacgccgacaccgctaataattttagaaaattgc-ataattcagtataattatatgtgtcggtgt 22484082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 23191879 - 23191921
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  23191879 acggacactgatacgccgacaccgctaataatttgagaaaatc 23191921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 26733279 - 26733329
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||| ||||||||| |||||||||||||||||||| ||||||    
T  26733279 gacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatc 26733329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 11072290 - 11072362
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggt 274  Q
    ||||||||||||||| ||||||||||| ||||    |||| |||| ||||||||||||||||||| ||||||||    
T  11072290 gacacgccgacaccgataataatttgaaaaaaata-tataattcaatataattatgtgtcggtgtcgtgtcggt 11072362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 30731031 - 30731103
Alignment:
Q  203 cacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgtcggtgt 276  Q
    |||||||||||||| ||||||||||||||||| | ||| |||| | ||||| ||||||||||| |||| |||||    
T  30731031 cacgccgacaccgcgaataatttgagaaaatcac-ataattcagtgtaattgtgtgtcggtgtcgtgttggtgt 30731103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 49107795 - 49107844
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    ||||||| ||||||  ||||||| ||||||||||||||||||||||||||    
T  49107795 ggacacgacacggactctgacacaccgacaccgctaataatttgagaaaa 49107844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 20549780 - 20549816
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| ||||||||||||||||||||||||||||    
T  20549780 actgacacaccgacaccgctaataatttgagaaaatc 20549816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 2948669 - 2948708
Alignment:
Q  195 gatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  2948669 gatactgacacgccgacaccgctgataattttagaaaatc 2948708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 21828482 - 21828439
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  21828482 cacggacactgacacgccgacaccgttagtaatttgagaaaatc 21828439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 233
Target Start/End: Original strand, 28155563 - 28155594
Alignment:
Q  202 acacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||||||||||||||||||||||||||||    
T  28155563 acacgccgacaccgctaataatttgagaaaat 28155594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 598160 - 598233
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||  |||||| || |||| | |||||| ||||||||  |||||||||||||||||| ||||||||    
T  598160 tatgaagcacgac-acggacaccagacatgacacggacactgacacatcgacaccgctaataatttaagaaaatc 598233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 5235960 - 5236010
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||| ||| || ||||||||| |||||||||||||||||| |||||||    
T  5235960 ggacacgacacagacactgacacgtcgacaccgctaataatttaagaaaat 5236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 20545312 - 20545270
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| |||||||| |||||||||||||||||| ||||||    
T  20545312 acggatacggacacgccaacaccgctaataatttgaaaaaatc 20545270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 26329476 - 26329418
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||| | ||||||| ||| || ||||||||||||||| || ||||||||||||||||    
T  26329476 acggacactggacacgacacagacactgacacgccgacatcgttaataatttgagaaaa 26329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 4017879 - 4017830
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    ||||||| |||||| || ||||||||||||| | ||||||||||||||||    
T  4017879 ggacacgacacggacaccgacacgccgacacggataataatttgagaaaa 4017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 6630982 - 6630949
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaa 231  Q
    ||||||||||||||||| ||||||||||||||||    
T  6630982 actgacacgccgacaccactaataatttgagaaa 6630949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 25791642 - 25791675
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaa 231  Q
    ||||||||||||||||||||||| ||||||||||    
T  25791642 actgacacgccgacaccgctaattatttgagaaa 25791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 11061162 - 11061110
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||| ||| |||||| |||||||| ||||||| ||||||||||||| ||||||    
T  11061162 cggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatc 11061110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 17851396 - 17851456
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| || |||||| |||||  ||| |||||||||||||| ||||||||    
T  17851396 acggacaccggacacgacatggataccgacacatcgataccgctaataattttagaaaatc 17851456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 22868031 - 22868067
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  22868031 actgacacgccgacaccactaataatatgagaaaatc 22868067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 9027143 - 9027203
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  9027143 acggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatc 9027203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 10294079 - 10294175
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgt 276  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||| |||||| |||||||| | ||||  ||||||||||||| |||| |||||    
T  10294079 ccggacacgacacggatactgacatgccgataccgctaataatttgagataatcgc-atatttcaatgtaattatatgtgtcggtgtcgtgttggtgt 10294175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 853968 - 853893
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| |||| |||||||| ||||||||| ||||||| |||||||||||||||  |||||||||||| ||||||    
T  853968 ctatgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatc 853893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 5000720 - 5000660
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||| | |||||||||||||||| ||||||||||||||||| |||||||||    
T  5000720 acggacaccggacatgacacggatactgacacgtcgacaccgctaataattcgagaaaatc 5000660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 8365628 - 8365560
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| |||||||| || |||||| |||||| ||||||||||||||||  ||||||||||||    
T  8365628 ctatgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttga 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 12696277 - 12696348
Alignment:
Q  161 atgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||||| |||||||| | ||||||| |||||| |||||||||||||||| ||||||||||||| |||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaat 12696348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 9629357 - 9629408
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  9629357 ggacacgacacggatattgacacgccgacaccgccaataatttgagaaaatc 9629408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 30866253 - 30866178
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| |||||||||||| ||||||| | ||| || || ||||| || |||||||||||||||||||||||||    
T  30866253 ctatgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatc 30866178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 6389693 - 6389767
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||||||| | || ||| ||||||||| |||||| ||| |||||||||||| | |||||||||||||||||    
T  6389693 ctatgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaat 6389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 9658854 - 9658904
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatc 9658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 19040339 - 19040377
Alignment:
Q  196 atactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19040339 atactgacacgccgacaccgctaataatttgagaaaatc 19040377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 16766662 - 16766765
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtc 271  Q
    |||||| ||||||||| || ||| |||||||||||||||| ||||||||||||| |||||| | ||| |||| | |||||  | |||||||||| |||||    
T  16766662 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcagtgtaattacaagtgtcggtgtcgtgtc 16766760  T
Q  272 ggtgt 276  Q
    |||||    
T  16766761 ggtgt 16766765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 3398569 - 3398637
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||| | ||||||||  || ||||| |||||| |||||||||||||||| |||||||||||||    
T  3398569 ctatgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttga 3398637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 5732604 - 5732544
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| | ||||||| || ||| |||||||||||||||||| ||||||||||||||||||    
T  5732604 acggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatc 5732544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 7938081 - 7938141
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| || ||| |||||||||||||||| ||||||||||||| ||||||    
T  7938081 acggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatc 7938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 9107464 - 9107404
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| ||| |||||||||||| ||||||||||||| ||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatc 9107404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 13851712 - 13851760
Alignment:
Q  185 acacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  13851712 acacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 7977924 - 7977865
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| | ||||||| || |||||||||||||||||||| ||||||||||||| |||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaat 7977865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 20371187 - 20371144
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| | |||||||||||||||||||||||||||||||||||    
T  20371187 cacggacattgacacgccgacaccgctaataatttgagaaaatc 20371144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 426601 - 426548
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||| |||||| |||||||||||||||| | ||||||||||| ||||||    
T  426601 ccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatc 426548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 7265668 - 7265627
Alignment:
Q  193 cggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  7265668 cggacactgacacgccaacaccgctaataatttgagaaaatc 7265627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 34073441 - 34073338
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 271  Q
    |||||| | ||||||| |||||| ||||||| ||| ||| ||||||||||||||||||||| | ||| |||| | ||||  |||| |||||||| |||||    
T  34073441 acggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctc-ataattcagtgtaattatatgggtcggtgtcgtgtc 34073343  T
Q  272 ggtgt 276  Q
    |||||    
T  34073342 ggtgt 34073338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 8777059 - 8777007
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| |||||| ||||||||||||||||  |||||||||||| ||||||    
T  8777059 cggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 8777007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 34595099 - 34595159
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| | ||||||||||||||  |||||||||||| ||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatc 34595159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 17841666 - 17841623
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  17841666 cacggacactgacacgccgacacagctaataatttgaaaaaatc 17841623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 31579311 - 31579229
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 265  Q
    |||||||| || ||| |||| ||| || |||||| |||||||||||||||||| | ||| |||| | |||||||||||||||||    
T  31579311 cggacacgacatggacactgccacaccaacaccgttaataatttgagaaaatcac-ataattcagtgtaattatgtgtcggtgt 31579229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 25038180 - 25038106
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||||||| ||||||||   | | ||| ||| ||||||||||||  ||||||| |||||||||||||||||    
T  25038180 ctatgaagcacggatacggacattgaatacgacacagatactgacacgttgacaccgttaataatttgagaaaat 25038106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 31959111 - 31959184
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||| |||||||| | ||||| | |||| | |||||||||||| ||| ||||||||||||| ||||||    
T  31959111 tatgaagcacggatacggacac-ggacatgacacgaacactgacacgccgtcacagctaataatttgaaaaaatc 31959184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 10842524 - 10842557
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||||||||||||| ||||||    
T  10842524 gacacgccgacaccgctaataatttgaaaaaatc 10842557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 677826 - 677862
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| | ||||||||||||||||||    
T  677826 actgacacgccgacactgttaataatttgagaaaatc 677862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 4877890 - 4877965
Alignment:
Q  159 ctatgaagcacgaatacggactc--cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||||||||  |||||||| |  || ||||| |||||||| |||||| ||||||| ||||||||||||| ||||    
T  4877890 ctatgaagcacagatacggacacgccgaacacgacacggatagtgacacaccgacacagctaataatttgaaaaaa 4877965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 7930254 - 7930330
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||| | |||| ||| |||||||| | ||||| ||||||| ||||||||   ||||||||||| ||||||    
T  7930254 actatgaagcatggatacagacaccggacacagaacggacactgacatgccgacacaattaataatttgaaaaaatc 7930330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 7996448 - 7996412
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  7996448 actgacatgccgacactgctaataatttgagaaaatc 7996412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 8022353 - 8022389
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  8022353 actgacatgccgacactgctaataatttgagaaaatc 8022389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 10339196 - 10339160
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||||| | |||||||||||||||    
T  10339196 actgacacgccgacaccgcgattaatttgagaaaatc 10339160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 16833281 - 16833333
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| ||| || ||||||||||||||||  |||||||||||| ||||||    
T  16833281 cggacacgacacagacactgacacgccgacacaactaataatttgaaaaaatc 16833333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 17341734 - 17341698
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  17341734 actgacacgccgacaccgttaataatttgataaaatc 17341698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 21395374 - 21395342
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||| ||||||||||||||||||||||||    
T  21395374 gacacgccaacaccgctaataatttgagaaaat 21395342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 21424872 - 21424836
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  21424872 actgacacgccaacaccgctaataatttgaaaaaatc 21424836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 316
Target Start/End: Complemental strand, 34073304 - 34073276
Alignment:
Q  288 aattcgaggagtgtccgtgcttcatagtt 316  Q
    |||||||||||||||||||||||||||||    
T  34073304 aattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 21782927 - 21782817
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtg 258  Q
    ||||||||||||||||| ||| | ||||||| |||  | |||||||||||||||| |||||||||||||||||||| | ||| |||| | ||||||||||    
T  21782927 ctatgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcac-ataattcagtgtaattatgtg 21782829  T
Q  259 tcggtgtggtgt 270  Q
     |||||| ||||    
T  21782828 ccggtgtcgtgt 21782817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 33519736 - 33519800
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataat 223  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||||| |||||||||||||||||    
T  33519736 ctatgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 20539783 - 20539708
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||| |||||||| | ||||||| |||||| ||||||||| |||||| ||||||||||||| ||||||    
T  20539783 ctatgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatc 20539708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 265
Target Start/End: Original strand, 4332891 - 4332981
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 265  Q
    |||||| ||||||||||||| |||||| ||| |||||||| | |||||||||| ||||||| | ||| |||| | |||||||||||||||||    
T  4332891 acggacaccggacacggcacagatacttacatgccgacactgataataatttgggaaaatcac-ataattcaatgtaattatgtgtcggtgt 4332981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 21616737 - 21616787
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatc 21616787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 19536507 - 19536434
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||||||||  |||||||| ||||||||| |||||| | ||||||||||||||  |||||||||||| ||||    
T  19536507 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaa 19536434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 23717976 - 23718048
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaa 231  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| |||||||||||||||||||||||||    
T  23717976 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 23718048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 24105648 - 24105720
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaa 231  Q
    ||||||||||||| |||| ||| | ||||| | |||||| |||||||| |||||||||||||||||||||||||    
T  24105648 actatgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaa 24105720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 1327976 - 1328033
Alignment:
Q  207 ccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 265  Q
    ||||||||||||||||||||||||||||  || | |||| |||||||||||||||||||    
T  1327976 ccgacaccgctaataatttgagaaaatc-ataaaattcagtataattatgtgtcggtgt 1328033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 18276486 - 18276570
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgt 259  Q
    |||||| |||||||||  || || ||||| | ||||||||||||||||||||||||||||| || || |||| | |||||||||||    
T  18276486 acggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcact-taattcagtgtaattatgtgt 18276570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 21624217 - 21624282
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataattt 225  Q
    |||||||| || |||||||| ||| ||||| ||| || |||||||||||||||| |||||||||||    
T  21624217 tatgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattt 21624282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 36409711 - 36409631
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 265  Q
    |||||| |||||||||| ||| |||||||||||| ||||||||| |||||| | ||| || | | |||||||||||||||||    
T  36409711 gacacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcac-ataatttagtgtaattatgtgtcggtgt 36409631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 37411313 - 37411278
Alignment:
Q  199 ctgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||||||||||||||||||||||||||    
T  37411313 ctgacatgccgacaccgctaataatttgagaaaatc 37411278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 38117261 - 38117193
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||| |||||||| ||||||||| |||      |||||||||||||| ||||||||||||| ||||||    
T  38117261 tatgaagcacggatacggacaccggacacgacac------tgacacgccgacacagctaataatttgaaaaaatc 38117193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 14996333 - 14996260
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    ||||||||||||| |||||||| | | ||| | |||||| ||||||| |||||||| ||||||||||||| ||||    
T  14996333 actatgaagcacggatacggacgcag-acatgacacggacactgacaagccgacacagctaataatttgaaaaaa 14996260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 18420506 - 18420468
Alignment:
Q  196 atactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  18420506 atactgacacgccaacactgctaataatttgagaaaatc 18420468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 21374810 - 21374734
Alignment:
Q  158 actatgaagcacgaatacggactccggacacgg--cacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||||||||| |||||||| | |||||| |  |||||| ||| |||||||||||| ||||||||||||| |||||    
T  21374810 actatgaagcacggatacggacac-ggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaat 21374734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 28412315 - 28412404
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtg 264  Q
    |||||| || |||||| |||||| ||| ||||| | |||||| ||||||||||| |||||| | ||| |||| | ||||||||||||||||    
T  28412315 acggacaccagacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcac-ataattcagtgtaattatgtgtcggtg 28412404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 31018557 - 31018615
Alignment:
Q  176 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||| ||||| ||| || ||| ||||||||||| |||||||||||||||| ||||||||    
T  31018557 ggacaccggatacgacatggacactgacacgccaacaccgctaataatttcagaaaatc 31018615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 44860320 - 44860388
Alignment:
Q  209 gacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgt 276  Q
    |||||||||||||||||||||||||||| ||| |||| | ||||  ||||||||||||| |||| |||||    
T  44860320 gacaccgctaataatttgagaaaatcgc-ataattcagtgtaattatatgtgtcggtgtcgtgttggtgt 44860388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 4142936 - 4142875
Alignment:
Q  172 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||| ||| ||||| | |||| ||||||||||||||||| |||| ||||| |||||||    
T  4142936 atacggacaccgaacacgacccggacactgacacgccgacaccactaacaatttaagaaaat 4142875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 21091706 - 21091747
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||| |||||||| ||||||||||||||||||| |||||||    
T  21091706 acggacactgacacaccgacaccgctaataatttaagaaaat 21091747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 896200 - 896236
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  896200 actgacacgccgacactgctaatagtttgagaaaatc 896236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 10535842 - 10535794
Alignment:
Q  185 acacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||| ||| |||||| | |||||||||||| |||||||||||||||||    
T  10535842 acacgacacagatactaatacgccgacaccgataataatttgagaaaat 10535794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 30404936 - 30404884
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| | |||||| |||||||||||||||| | ||||||||||| ||||||    
T  30404936 cggacatgacacggacactgacacgccgacacggttaataatttgaaaaaatc 30404884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 31284041 - 31284073
Alignment:
Q  202 acacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||| ||||||||||||||||||||    
T  31284041 acacgccgacactgctaataatttgagaaaatc 31284073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 42832343 - 42832311
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||| |||||||||||||||||||||||||||    
T  42832343 gacacaccgacaccgctaataatttgagaaaat 42832311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 13349 - 13425
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  |||||||||||||||||||    
T  13349 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 21978 - 21902
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||| |||||||| ||||| | | |||||| ||||||||||||||||  |||||||||||||||||||    
T  21978 actatgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatc 21902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 25192456 - 25192388
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||||||||||||  ||||||||  ||||| |||||||||||||||| |||||||||||||    
T  25192456 ctatgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttga 25192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 22651948 - 22652044
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcggtgt 276  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||| |||||| | ||| |||| |||||||  | |||||||||| ||||||||||    
T  22651948 ccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-ataattcaatataattacaagtgtcggtgtcgtgtcggtgt 22652044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 29510396 - 29510295
Alignment:
Q  176 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataatt--atgtgtcggtgtggtgtcgg 273  Q
    |||| ||||||||| |||||| |||||||||||||||| ||||||||||||| |||||| | | | |||| |||||||  | |||||||||| |||||||    
T  29510396 ggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcac-aaaattcagtataattacaagtgtcggtgtagtgtcgg 29510298  T
Q  274 tgt 276  Q
    |||    
T  29510297 tgt 29510295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 926888 - 926822
Alignment:
Q  168 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||| |||||| ||||||||| |||||| ||||||||||| ||||  |||||||||||||||||||    
T  926888 acgaacacggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatc 926822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 27213519 - 27213572
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||    
T  27213519 ccggacacgacacggatacagacacgccgacactgctaataatttcagaaaatc 27213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 126457 - 126390
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| ||||| || | |||||||  ||||||||||||||||| ||||||||||||||||||    
T  126457 ctatgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataatttga 126390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 13437073 - 13436998
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||| | | |||| ||||||| | || ||| |||||||||||||||| ||||||||||||| ||||||    
T  13437073 ctatgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatc 13436998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 31109595 - 31109552
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  31109595 cacggacactgacacgccgacaccgttaataatttgagaaaatc 31109552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 24362298 - 24362236
Alignment:
Q  172 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| ||||| ||| ||| || || ||||||||||||||||||||||||||||| ||||    
T  24362298 atacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatc 24362236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 39954346 - 39954313
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  39954346 gacacgccgacaccgctaataatttgagaaaatc 39954313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 31236651 - 31236611
Alignment:
Q  194 ggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  31236651 ggatacggacacgccgacactgctaataatttgagaaaatc 31236611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 37283887 - 37283812
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtgg 267  Q
    |||||| ||||||| || | ||||||||||||| |||||||||| | ||| |||| | |||||||||||||||||||    
T  37283887 cacggacactgacatgcgggcaccgctaataatctgagaaaatcac-ataattcagtgtaattatgtgtcggtgtgg 37283812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 4298994 - 4298920
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||| ||| |||| | ||||||| ||| |||||| |||||||||||| | ||||||||||| ||||||    
T  4298994 ctatgaagcacggatatggacac-ggacacgacacagatactaacacgccgacacagttaataatttgaaaaaatc 4298920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 11944615 - 11944690
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||  |||||||| ||  ||||| ||||||| || |||||||||||| | ||||||||||| ||||||    
T  11944615 ctatgaagcacagatacggacaccaaacacgacacggatgctaacacgccgacactgttaataatttgataaaatc 11944690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 4673521 - 4673459
Alignment:
Q  172 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||  |||||||| ||| || |||||||||||||||| | ||||||||||| ||||||    
T  4673521 atacggacatcggacacgacacagacactgacacgccgacacagataataatttgaaaaaatc 4673459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 27101506 - 27101540
Alignment:
Q  200 tgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||||||||||||||| ||||||    
T  27101506 tgacacgccgacaccgctaataatttgaaaaaatc 27101540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 34897068 - 34897110
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||| || |||||| |||||||||||||||||||||||||||    
T  34897068 acggacacagacacgtcgacaccgctaataatttgagaaaatc 34897110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 13844663 - 13844630
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||| ||||||||||||||||||||    
T  13844663 gacacgccgacactgctaataatttgagaaaatc 13844630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 2572150 - 2572090
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| | ||||||| ||||||||| |||||| ||||||  |||||||||||| ||||||    
T  2572150 acggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatc 2572090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 276
Target Start/End: Complemental strand, 11927195 - 11927077
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatg 256  Q
    |||||||||||  |||||||| ||  ||||| ||||||| || | |||||||||| | ||||||||||| |||||| | ||| |||| | ||||  ||||    
T  11927195 ctatgaagcacagatacggacaccaaacacgacacggatgctaatacgccgacactgttaataatttgataaaatcac-ataattcagtgtaattatatg 11927097  T
Q  257 tgtcggtgtggtgtcggtgt 276  Q
    ||||||||| |||| |||||    
T  11927096 tgtcggtgtcgtgttggtgt 11927077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 20873042 - 20873094
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| |||||| |||||||||||||||  | ||||||||||| ||||||    
T  20873042 cggacacgacacggacactgacacgccgacatagataataatttgaaaaaatc 20873094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 6427323 - 6427375
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  6427323 cggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatc 6427375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 40917716 - 40917776
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatc 40917776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 398858 - 398799
Alignment:
Q  175 cggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  398858 cggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatc 398799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 2896207 - 2896155
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  2896207 cggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatc 2896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 5376609 - 5376535
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||| ||||| |||| || |||||||||| |||||| ||| |||||||||||||||||||||||| |||||||    
T  5376609 actatgaggcacgtatacaga-tccggacacgacacggacactaacacgccgacaccgctaataatttaagaaaat 5376535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 5927449 - 5927374
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||| ||||||| |||||||| ||||||||| |||||| ||||||||||  |||| ||||||||||||| ||||||    
T  5927449 ctattaagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataatttgaaaaaatc 5927374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 10572690 - 10572623
Alignment:
Q  167 cacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||| |||||||| ||||||||| || | | ||||||||||||||||| |||||||||||||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatc 10572623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 12443538 - 12443494
Alignment:
Q  190 gcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||    
T  12443538 gcacggatacggacacgccgacacagctaataatttgagaaaatc 12443494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 17831601 - 17831565
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||||||||||||||||||||||||    
T  17831601 actgacacgccgacaccgctaataatttgagaaaatc 17831565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 36878450 - 36878486
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||||||||||||||||||||||||    
T  36878450 actgacacgccgacaccgctaataatttgagaaaatc 36878486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 1486796 - 1486703
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcgg 273  Q
    ||||| ||| ||||||||||||||||| ||||| ||||||||||||| |||||| | ||| |||| | |||||||  |||||||||| |||||||    
T  1486796 ccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcac-ataattcagtgtaattataagtgtcggtgtcgtgtcgg 1486703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 38503285 - 38503386
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 271  Q
    |||||| | ||||| | |||||| ||| |||| ||||||||||||||||||||||||||||  ||||||||| | ||||  |||||||||||||  ||||    
T  38503285 acggacacgggacatgacacggacactaacacaccgacaccgctaataatttgagaaaatc-atatatttcagtgtaattatatgtgtcggtgtcctgtc 38503383  T
Q  272 ggt 274  Q
    |||    
T  38503384 ggt 38503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 48040558 - 48040503
Alignment:
Q  172 atacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||| ||||||||| |||||| |||||||||||||||| | |||||||||||    
T  48040558 atacggacaccggacacgacacggacactgacacgccgacacagataataatttga 48040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 1262856 - 1262933
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgt 259  Q
    ||||||||| |||| | || ||||||||||||| |||||||||||||||||||| | ||| |||| |||||||| ||||    
T  1262856 ccggacacgacacgaacacggacacgccgacacagctaataatttgagaaaatcac-ataattcaatataattaagtgt 1262933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 9709795 - 9709845
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||| ||||||| ||| |||||||||||||||||||||||||    
T  9709795 gacacgacacggacactgacatgcctacaccgctaataatttgagaaaatc 9709845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 34298411 - 34298461
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||| |||||||| |||||||| |||||||||||||||||||    
T  34298411 gacacgacacggaaactgacacaccgacaccactaataatttgagaaaatc 34298461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 39130876 - 39130802
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||||||| |||||||| ||||||||| || ||||| |||||||| |||||   ||||||||| |||||||    
T  39130876 ctatgaagcacggatacggacaccggacacgacatggatattgacacgctgacactattaataattttagaaaat 39130802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 19562691 - 19562655
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| ||||||||||||||||||||    
T  19562691 actgacacgccgacactgctaataatttgagaaaatc 19562655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 609528 - 609493
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||||||||||||| ||||||||||||||||||    
T  609528 actgacacgccgacaccactaataatttgagaaaat 609493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 6415078 - 6415035
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||    
T  6415078 cacggacactgacacgccgacatcgctaattatttgagaaaatc 6415035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 31014993 - 31015068
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||| | || ||| |||| |||| |||||  |||||| |||| |||| ||||||||||||||||||||    
T  31014993 ctatgaagcacggacacagacaccgggcacgacacgggcactgacgcgcctacacagctaataatttgagaaaatc 31015068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 46348460 - 46348417
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  46348460 cacggacactgacacgccgacacagctaataatttgaaaaaatc 46348417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 48450673 - 48450622
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||||| |||||| ||||||||||| |||| ||||||||||||| |||||    
T  48450673 cggacacgacacggacactgacacgccaacacagctaataatttgaaaaaat 48450622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 3490460 - 3490426
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||||||||||||| ||||||||||||||||||    
T  3490460 actgacacgccgacactgctaataatttgagaaaa 3490426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 10475045 - 10475011
Alignment:
Q  200 tgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||||||||| |||||||||||    
T  10475045 tgacacgccgacaccgctaataacttgagaaaatc 10475011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 15641130 - 15641064
Alignment:
Q  168 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||| ||||||  |||||| | |||||| ||||||| |||||||| ||||||||||| ||||||||    
T  15641130 acgaacacggacatcggacatgacacggacactgacatgccgacactgctaataatttaagaaaatc 15641064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 40285724 - 40285686
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatcgc 236  Q
    |||||||| || |||||||||||||||||||||||||||    
T  40285724 actgacacaccaacaccgctaataatttgagaaaatcgc 40285686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 20157437 - 20157384
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||| |||||  ||||||||  |||||||||||||||| ||||||||||    
T  20157437 ccggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatc 20157384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 21530681 - 21530714
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||| ||||||||||||||||||    
T  21530681 gacacgccgacaccgttaataatttgagaaaatc 21530714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 41877534 - 41877505
Alignment:
Q  204 acgccgacaccgctaataatttgagaaaat 233  Q
    ||||||||||||||||||||||||||||||    
T  41877534 acgccgacaccgctaataatttgagaaaat 41877505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 48547991 - 48547938
Alignment:
Q  261 ggtgtggtgtcggtgtaggagatggcgaattcgaggagtgtccgtgcttcatag 314  Q
    ||||| |||||||||| ||| | | | |||||||||||||||||||||||||||    
T  48547991 ggtgtcgtgtcggtgtcggatacgcctaattcgaggagtgtccgtgcttcatag 48547938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 10577829 - 10577769
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| || ||||||||||||| ||||||  ||| ||||||||    
T  10577829 acggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatc 10577769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 18556533 - 18556497
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  18556533 cacggacactgacacgccgacacagctaataatttga 18556497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 25452215 - 25452152
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgt 265  Q
    |||| ||| |||| |||||||||||||||||||| | ||| |||| | |||||||||||||||||    
T  25452215 gacatgccaacactgctaataatttgagaaaatctc-ataattcagtgtaattatgtgtcggtgt 25452152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 34315663 - 34315722
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaa 219  Q
    |||||||||||| ||||||| |  ||||||| |||||||||||||| |||||||| |||||    
T  34315663 ctatgaagcacggatacgga-tatggacacgacacggatactgacatgccgacacagctaa 34315722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 20122 - 20197
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||  |||||||| ||||||||| |||||| | |||||||||||||| ||||||||||||| ||||||    
T  20122 ctatgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 20197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 8383207 - 8383282
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||| |||||| | |||||| | ||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  8383207 ctatgtagcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatc 8383282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 5441128 - 5441029
Alignment:
Q  172 atacggac-tccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattatgtgtcggtgtggtgt 270  Q
    |||||||| |||||||||| ||| || |||||||||||| ||||||||| |||||||||||||| | ||| |||| |  |||||||||||||||| ||||    
T  5441128 atacggacatccggacacgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcac-ataattcaatggaattatgtgtcggtgttgtgt 5441030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 24205135 - 24205076
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| ||||||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaat 24205076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 8842280 - 8842346
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataattt 225  Q
    |||||||||||| |||||||| ||||| ||| |||||| | ||||| ||||||||||||||||||||    
T  8842280 ctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataattt 8842346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 5407325 - 5407261
Alignment:
Q  190 gcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat 255  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| | ||| |||||| |||||||    
T  5407325 gcacggataccgacacgccgacaccgctaaaaatttgagaaaatcac-ataattcattgtaattat 5407261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 28917966 - 28918026
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| |||||||||||||||  ||||||||||||| ||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatc 28918026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 4991061 - 4991002
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| ||| ||||| |||||| |||||||| ||||||||||||||| |||||||||||    
T  4991061 acggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaat 4991002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 10335386 - 10335327
Alignment:
Q  168 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    ||||| |||||| ||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  10335386 acgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttga 10335327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 55401025 - 55401100
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||  |||||||| ||||| ||| |||||| ||||| ||||||||||  |||||||||||| ||||||    
T  55401025 ctatgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatc 55401100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 8587129 - 8587055
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||  |||||||| ||||||| | |||||| ||||||||||||||||  ||| |||||||| ||||||    
T  8587129 tatgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatc 8587055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 9800014 - 9800064
Alignment:
Q  183 ggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||| |||| | ||||||||||||||||| ||||||||||||||||||    
T  9800014 ggacacgacacgtacactgacacgccgacacctctaataatttgagaaaat 9800064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 32429488 - 32429414
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||| |||||||| ||||||||  |||| | | |||||| |||||| |||||||||||| ||||||||    
T  32429488 tatgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatc 32429414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 2620139 - 2620087
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| | |||| ||||||||||||||||| ||||| |||||||||||||    
T  2620139 cggacacgactcggacactgacacgccgacaccactaatcatttgagaaaatc 2620087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 8039908 - 8039826
Alignment:
Q  195 gatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtcggtgt 276  Q
    |||| ||||||||| ||||||||||||||||||||||||   |||| |||| | ||||  ||||||||||||| ||||||||||    
T  8039908 gatattgacacgccaacaccgctaataatttgagaaaat-tatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgt 8039826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 15796388 - 15796328
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| | |||||||||||||| | ||||||||||| ||||||    
T  15796388 acggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatc 15796328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 26492291 - 26492239
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| |||||| |||||||||||||||  ||||||||||||| ||||||    
T  26492291 cggacacgacacggacactgacacgccgacagagctaataatttgaaaaaatc 26492239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 21720746 - 21720785
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaa 230  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  21720746 cacggacactgacacgccgacaccgataataatttgagaa 21720785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 25064859 - 25064934
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| ||||  ||| ||| ||||||||| ||| || | ||||||||||||||||||||| |||||| ||||||    
T  25064859 ctatgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatc 25064934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 12674585 - 12674535
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||| | |||||| ||||||| ||||||||||||||||||||    
T  12674585 gacacgacacggacattgacacaccgacactgctaataatttgagaaaatc 12674535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 14223962 - 14223889
Alignment:
Q  158 actatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    ||||||||||||||| || ||| | ||||||| ||| || || ||||||||||||| | ||||||||||||||||    
T  14223962 actatgaagcacgaacacagacac-ggacacgacacagacaccgacacgccgacacagataataatttgagaaaa 14223889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 3865633 - 3865592
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||| |||||||||||||||| ||||||||||||| ||||    
T  3865633 cacggacactgacacgccgacacagctaataatttgaaaaaa 3865592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 12703989 - 12704030
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    ||||||||  |||||||||||||| |||||||||||||||||    
T  12703989 cacggatatggacacgccgacaccactaataatttgagaaaa 12704030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 34307846 - 34307794
Alignment:
Q  202 acacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat 255  Q
    |||||| |||||||||||||||||||||||||| | |||||||| | |||||||    
T  34307846 acacgctgacaccgctaataatttgagaaaatcac-atatttcagtgtaattat 34307794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 3164119 - 3164059
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| | || |||| |||||| ||||||||||||| ||||||    
T  3164119 acggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatc 3164059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 4987361 - 4987325
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  4987361 actgacacgccgacacagctaataatttgaaaaaatc 4987325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 316
Target Start/End: Complemental strand, 5440993 - 5440965
Alignment:
Q  288 aattcgaggagtgtccgtgcttcatagtt 316  Q
    |||||||||||||||||||||||||||||    
T  5440993 aattcgaggagtgtccgtgcttcatagtt 5440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 6525750 - 6525714
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||| | |||||||||||||||||||||||||||    
T  6525750 actgacatgtcgacaccgctaataatttgagaaaatc 6525714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 10318111 - 10318075
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||| |||||||||||||||| |||||||||||||    
T  10318111 cacggacactgacacgccgacacagctaataatttga 10318075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 14618732 - 14618804
Alignment:
Q  160 tatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||||||||  ||||||| || |||||| |||||  ||||| |||| |||||| |||||||||| ||||||    
T  14618732 tatgaagcacgggtacggacaccagacacgacacgggcactgagacgctgacacccctaataatttaagaaaa 14618804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 14832080 - 14832124
Alignment:
Q  190 gcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||| |||||||||| || ||||||||||||| ||||||    
T  14832080 gcacggatacggacacgccgatacagctaataatttgaaaaaatc 14832124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 21479107 - 21479143
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  21479107 actgacacgccgacacagctaataatttgaaaaaatc 21479143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 25074781 - 25074813
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||||||||||| |||||||||||||||||    
T  25074781 gacacgccgacaccgataataatttgagaaaat 25074813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 26290360 - 26290396
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||||  ||||||||||||||||||    
T  26290360 actgacacgccgacaccattaataatttgagaaaatc 26290396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 26508083 - 26508135
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||  || ||||||||||||| ||||| ||||||||||||| ||||||    
T  26508083 cggacacgatacagatactgacacgctgacacagctaataatttgaaaaaatc 26508135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 40052321 - 40052357
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  40052321 actgacacgccgacacagctaataatttgaaaaaatc 40052357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 8763 - 8823
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||    
T  8763 acggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatc 8823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 225362 - 225303
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| ||||||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  225362 acggacaccggacacgacacggacactgacacgccgacacagataataatttgagaaaat 225303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 92790 - 92831
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  92790 acggacactgacacgccgacaccgctaataatttgagaaaat 92831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 178925 - 178853
Alignment:
Q  162 tgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||| |||  ||| ||||||||| |||||| ||||||||||||||||  |||||||||||| ||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatc 178853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 192325 - 192284
Alignment:
Q  192 acggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  192325 acggacactgacacgccgacaccgttaataatttgagaaaat 192284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 241559 - 241611
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttg 226  Q
    |||||| ||||||||| |||||| |||||||||||||||| ||||||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttg 241611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 23293080 - 23293020
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||| |||||| | |||||||||||||| ||||||||||||| ||||||    
T  23293080 acggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatc 23293020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 233
Target Start/End: Complemental strand, 35723455 - 35723420
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaat 233  Q
    ||||||||||||||||||||||||||||||||||||    
T  35723455 actgacacgccgacaccgctaataatttgagaaaat 35723420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 17345485 - 17345451
Alignment:
Q  198 actgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||||||||||||||||||||||||||||||||    
T  17345485 actgacacgccgacaccgctaataatttgagaaaa 17345451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 847918 - 847975
Alignment:
Q  176 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||| ||||||||| ||| || |||||||||||||  |||||||||||||||||||||    
T  847918 ggaccccggacacgacacagacactgacacgccgatgccgctaataatttgagaaaat 847975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 36635296 - 36635349
Alignment:
Q  181 ccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||| | |||| ||||||||||| ||||| |||||||||||||||||||    
T  36635296 ccggacacgactcggacactgacacgccaacaccactaataatttgagaaaatc 36635349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 24343472 - 24343531
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| ||||||||| ||||||  | ||||||||||||| | |||||||||||||||||    
T  24343472 acggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaat 24343531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 7012048 - 7012090
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| || ||||||||||||||| |||||||||||||||||    
T  7012048 cacggacaccgacacgccgacaccgataataatttgagaaaat 7012090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 7670625 - 7670709
Alignment:
Q  153 catatactatgaagcacgaatacggactccggacacggcacggatactgaca---cgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||||||||| |||  ||||||||| | |||| |||||||   ||||||||  ||||||| ||||||||||||    
T  7670625 catatagtatgaagcacgaatatggataccggacacgacgcggaaactgacacgtcgccgacattgctaatagtttgagaaaatc 7670709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 20521933 - 20521883
Alignment:
Q  184 gacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||| ||||||||||||| |||| ||||||||||| ||||||    
T  20521933 gacacgacacggacactgacacgccgataccgataataatttgataaaatc 20521883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 20633450 - 20633508
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||| || ||||||  ||||| ||||||||| |||||||||||||||||||| ||||    
T  20633450 acggacaccagacacgatacggacactgacacgtcgacaccgctaataatttgaaaaaa 20633508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 40613441 - 40613475
Alignment:
Q  200 tgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||||||||| ||||||||||||    
T  40613441 tgacacgccgacaccgctaatattttgagaaaatc 40613475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 28084475 - 28084544
Alignment:
Q  163 gaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||||  |||||||| ||||||||| ||| ||  ||||||||||||||| ||||| ||||||| ||||    
T  28084475 gaagcacagatacggacaccggacacgacacagacgctgacacgccgacacagctaagaatttgaaaaaa 28084544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 30298928 - 30298969
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||| |||||||||||||||| ||||||||||||| ||||    
T  30298928 cacggacactgacacgccgacacagctaataatttgaaaaaa 30298969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 30327796 - 30327837
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaa 232  Q
    |||||| |||||||||||||||| ||||||||||||| ||||    
T  30327796 cacggacactgacacgccgacacagctaataatttgaaaaaa 30327837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 30982967 - 30982869
Alignment:
Q  176 ggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcgg 273  Q
    |||| ||||| ||| |||||| || ||||||||   ||||||||| ||||||||||||| | |||||||| | |||||||  |||||||||| |||||||    
T  30982967 ggacaccggatacgacacggacacagacacgcc---accgctaatgatttgagaaaatcac-atatttcagtgtaattataagtgtcggtgtcgtgtcgg 30982872  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 1747205 - 1747237
Alignment:
Q  202 acacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||||||||| |||||||||||    
T  1747205 acacgccgacaccgctaataaattgagaaaatc 1747237  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 5775469 - 5775392
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacgga---tactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||||||||||| |||| | ||||||| ||||||   |||||||||  |||||||  ||||||||||||||||||    
T  5775469 ctatgaagcacgaatatggacacaggacacgacacggacactactgacac-acgacaccattaataatttgagaaaatc 5775392  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 16184801 - 16184842
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||||||||||||||  |||||||||||||||||||||    
T  16184801 cacggacactgacacgccgac--cgctaataatttgagaaaatc 16184842  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 28720827 - 28720894
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttga 227  Q
    |||||||||||| |||| ||| | ||||||| |||| | ||||||| |||||||| |||||||||||||    
T  28720827 ctatgaagcacgtatacagacac-ggacacgacacgaacactgacatgccgacacagctaataatttga 28720894  T

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Target: scaffold0652 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 556 - 496
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| ||| ||||| |||||| ||||| |||||||||| ||||||||||||| ||||||    
T  556 acggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatc 496  T

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Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 17979 - 17903
Alignment:
Q  159 ctatgaagcacgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatcg 235  Q
    |||||||||||| |||||||| | |||||||  ||  | ||  ||||||| ||||||||||||||||||||||||||    
T  17979 ctatgaagcacggatacggacactggacacgatacaaacaccaacacgcctacaccgctaataatttgagaaaatcg 17903  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 3281 - 3340
Alignment:
Q  174 acggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaat 233  Q
    |||||| ||||||||| |||||||||||||||| |||||  ||||| ||||| |||||||    
T  3281 acggacaccggacacgacacggatactgacacgtcgacaatgctaacaattttagaaaat 3340  T

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Target: scaffold0103 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 51793 - 51836
Alignment:
Q  191 cacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||    
T  51793 cacggacactgacacgccgacacagctaataatttgaaaaaatc 51836  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 21002 - 21068
Alignment:
Q  168 acgaatacggactccggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||| |||||| || |||||| |||||| ||||||| || ||||| | ||||||||||||||||||    
T  21002 acgaacacggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatc 21068  T

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Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 1636 - 1669
Alignment:
Q  201 gacacgccgacaccgctaataatttgagaaaatc 234  Q
    ||||||||||||||| ||||||||||||||||||    
T  1636 gacacgccgacaccgttaataatttgagaaaatc 1669  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 271
Target Start/End: Original strand, 28830 - 28913
Alignment:
Q  189 ggcacggatactgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataat--tatgtgtcggtgtggtgtc 271  Q
    |||||| | ||| |||||||||||||| ||||||||| |||||||||| ||| |||| | ||||  ||||||||||||| |||||    
T  28830 ggcacgaacactaacacgccgacaccgttaataatttaagaaaatcgc-ataattcaatgtaattatatgtgtcggtgttgtgtc 28913  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 53170 - 53248
Alignment:
Q  199 ctgacacgccgacaccgctaataatttgagaaaatcgctatatttcattataattat--gtgtcggtgtggtgtcggtgt 276  Q
    |||||||||||| ||||| ||||||||||||||||| | ||| |||| | |||||||  |||||||||  ||||||||||    
T  53170 ctgacacgccgataccgccaataatttgagaaaatcac-ataattcagtgtaattataagtgtcggtgccgtgtcggtgt 53248  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 46655 - 46707
Alignment:
Q  182 cggacacggcacggatactgacacgccgacaccgctaataatttgagaaaatc 234  Q
    |||||||| |||||| | |||||||||||||| | ||||||||||| ||||||    
T  46655 cggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatc 46707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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