View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_1D_low_1 (Length: 793)

Name: NF0438_1D_low_1
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_1D_low_1
NF0438_1D_low_1
[»] chr7 (1 HSPs)
chr7 (25-780)||(30651832-30652587)


Alignment Details
Target: chr7 (Bit Score: 724; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 25 - 780
Target Start/End: Complemental strand, 30652587 - 30651832
Alignment:
Q  25 gacattcaggccaagtgtttcaaacttctttccatattgtttcctagacttagttgaattgttggtgacaaaaaccaatctttttccctgaagaagttta 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30652587 gacattcaggccaagtgtttcaaacttctttccatattgtttcctagacttagttgaattgttggtgacaaaaaccaatctttttccctgaagaagttta 30652488  T
Q  125 acaataagatcaaatctcagagttttcgctgaacaaagaacagtggcagatcgaatactatagttaacatccacgcttgcaggcctagttcctacattag 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30652487 acaataagatcaaatctcagagttttcgctgaacaaagaacagtggcagatcaaatactatagttaacatccacgcttgcaggcctagttcctacattag 30652388  T
Q  225 tacacaaacctttgatctaagcatgtcaagtgtttcaggcactccttctatcaagctgtcccctttccatataactcctgcaaattaagtatcaacggaa 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30652387 tacacaaacctttgatctaagcatgtcaagtgtttcaggcactccttctatcaagctgtcacctttccatataactcctgcaaattaagtatcaacggaa 30652288  T
Q  325 aaaggaaaagtaccattacatcaatatcaacccattgataagaacccaatggcatacacatattaagaaaaagaaagcatcaaatgttaacaactcaaaa 424  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30652287 aaaggaaaagtaccgttacatcaatatcaacccattgataagaacccaatggcatacacatattaagaaaaagaaagcatcaagtgttaacaactcaaaa 30652188  T
Q  425 gtataccatcgaagagagaacaaaatgaaatcaatacatgggggacaaagacatcgtttaattaaaagaaagaaaaaatgtgtagttcagtcaagttcat 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30652187 gtataccatcgaagagagaacaaaatgaaatcaatacatgggggacaaagacatcgtttaactaaaagaaagaaaaaatgtgtagttcagtcaagttcat 30652088  T
Q  525 atggtgtctatcaaatatgacatgatccccttgtaacaccagctggaagttgtcacaaagtgtaaagcaaatcaatgtttataatttcaaacaacattaa 624  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30652087 atggtgtctatcaaatatgacatgatccccttgtaacaccagctggaagttgtcacaaagtgtaaagcaaatcaatgtttataatttcaaacaacattaa 30651988  T
Q  625 ccataaaaacacataatttgatccttaaactaataatatatagaaaagaactcacatgaaaatgctttagatcctagcaaaaataacaggatatacatat 724  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  30651987 ccataaaaacacataatttgatccttaaactaatgatatatagaaaagaactcacatgtaaatgatttagatcctagcaaaaataacaggatatacatat 30651888  T
Q  725 catcaaacaaataactcagttgatgacactgaaaccattttaagcatgatgtccat 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30651887 catcaaacaaataactcagttgatgacactgaaaccattttaagcatgatgtccat 30651832  T

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