View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_1D_low_11 (Length: 381)
Name: NF0438_1D_low_11
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 3 - 381
Target Start/End: Complemental strand, 5796136 - 5795758
Alignment:
| Q |
3 |
ataattctcatcaaggtaatattatcttctcctactattctaattttatttcaagtatatacagagacatcatgtttaaacatggatagcttatattatc |
102 |
Q |
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| T |
5796136 |
ataattttcatcaaggtaatattatcttctcctactattctaattttatttcaagtatatacagagacatcacgtttaaacatggatagcttatattatc |
5796037 |
T |
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| Q |
103 |
gctaatgagtaacgactaatctcctatgattgaacgtgcaggtgaacttcaaattgctcaaataacaatagccatttcatttaacacgagctacacggat |
202 |
Q |
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| T |
5796036 |
actaatgagtaacgactaatctcctatgattgaatgtgcaggtgaactccaaattgctcaaataacaatagccatttcatttaacacgagctacacggat |
5795937 |
T |
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| Q |
203 |
atgcagccttacattacaaagttagctggactcatagctcatgagttagatgttaatacatcacaggttagaaaatggtcatcaaagtgcaggaaatatt |
302 |
Q |
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| T |
5795936 |
atgcagccttacattacaaagttagctggattcatagctcatgagttagatgttaatacatcacaggttagaaaatggtcatcaaagtgcaggaaatatt |
5795837 |
T |
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| Q |
303 |
ggtgcttagttatagctttaagtataatttattaatttgatgctaataggagatgtaattaactatatgcatatacaat |
381 |
Q |
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| T |
5795836 |
ggtgcttagttatagctttaagtataatttattaatttgatgctaaaaggagatgtaattaactatatgcatatacaat |
5795758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 278
Target Start/End: Original strand, 39689925 - 39690062
Alignment:
| Q |
141 |
caggtgaacttcaaattgctcaaataacaatagccatttcatttaacacgagctacacggatatgcagccttacattacaaagttagctggactcatagc |
240 |
Q |
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|||||||| | ||||| || |||||||||||||| |||||||||| | |||||| |||||| ||||| | ||||| | || |||||||||||||| |
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| T |
39689925 |
caggtgaattccaaatcgcacaaataacaatagcagtttcatttaatatcagctacgatgatatgaagcctcgccttacagaattggctggactcatagc |
39690024 |
T |
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| Q |
241 |
tcatgagttagatgttaatacatcacaggttagaaaat |
278 |
Q |
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| T |
39690025 |
tcacgagttaaatgttaatacttcccaggttagaaaat |
39690062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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